Prosopis cineraria: 129309437
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Entry
129309437 CDS
T09047
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2 isoform X1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
pcin
Prosopis cineraria
Pathway
pcin03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pcin00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
129309437
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pcin03041
]
129309437
03009 Ribosome biogenesis [BR:
pcin03009
]
129309437
Enzymes [BR:
pcin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
129309437
Spliceosome [BR:
pcin03041
]
Complex A
U2 snRNP components
U2 related factors
129309437
Complex B
129309437
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
129309437
Ribosome biogenesis [BR:
pcin03009
]
Eukaryotic type
90S particles
Helicases
129309437
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
Helicase_C
DEAD
AAA_22
AAA_19
ResIII
nSTAND3
FtsK_SpoIIIE
SRP54
Cas3-like_C_2
AAA_30
Flavi_DEAD
T2SSE
AAA_7
AAA_33
Motif
Other DBs
NCBI-GeneID:
129309437
NCBI-ProteinID:
XP_054806990
LinkDB
All DBs
Position
Unknown
AA seq
727 aa
AA seq
DB search
MGTERKRKVSLFDVVDDSTVKMAKANGGAVGANNTIGNNLINRWTGRPYSPRYYEILEKR
KTLPVWQQKEEFFQALKGNQTLILVGETGSGKTTQIPQFVLEAVDLETPDKRRKMMIGCT
QPRRVAAMSVSRRVAEEMDVNIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLL
ERYKVIILDEAHERTLATDVLFGLLKEVLKNRTDLKLVVMSATLEAEKFQGYFNGAPLMK
VPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPPGDILVFLTGEEEIEDACRKISKE
IANLGDQVGPVKAVPLYSTLPPAMQQKIFEPAPPPLTEGGPPGRKIVVSTNIAETSLTID
GIVYVIDPGFSKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKSFH
NDLQPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDD
DGNLTKLGEIMSEFPLDPQMSKMLVVSPEFNCSNEILSVSAMLSVPNCFVRPREAQKAAD
EAKARFGHIDGDHLTLLNVYHAYKQNNEDPSWCYDNFVNHRALKAADNVRQQLVRIMARF
NLKLCSTDFNSRDYYVNIRKAMLAGYFMQVAHLERTGHYLTVKDNQVVHLHPSNCLDHKP
EWVIYNEYVLTSRNFIRTVTDIRGEWLVDIAPHYYDLSNFPQCEAKRVLERLYKKREREN
EEARSRK
NT seq
2184 nt
NT seq
+upstream
nt +downstream
nt
atgggtactgaaagaaagaggaaggtgagcctgttcgatgtggtagatgattctacagtt
aaaatggccaaagcaaatggtggggcagttggtgccaacaacaccattggtaacaattta
attaataggtggactgggagaccttactcaccaagatactatgaaattttggagaagaga
aaaactttacctgtatggcaacagaaggaggagtttttccaggctttgaagggtaaccag
actctaatattagttggggagactggcagtggcaaaactacccagattcctcagtttgtt
ctggaagctgtagatttagaaacaccagataaacgcaggaagatgatgattggatgcact
cagcctcgtagggtggctgcaatgtctgtttccagacgtgtggctgaagagatggatgta
aatattggagaagaggttggttatagcatcagatttgaggattgcagtagtgccaggaca
gttttgaagtacctgacagatggtatgcttctaagagaagcaatgacagatccacttttg
gagcgatacaaagtaattattcttgatgaggcacatgaaaggactttagctacagatgtg
ctatttggtcttcttaaggaagtgcttaaaaatagaactgacttgaagctggttgttatg
agtgcaactcttgaggctgaaaagtttcagggctattttaatggtgcacctcttatgaaa
gttcctggaaggctgcatccagttgaaattttttatactcaggaacctgaaagggattac
ttggaagctgcgatcaggactgtggtacagattcacatgtgtgaacctcctggagatata
ctggtatttttgactggtgaggaagagatagaagatgcatgccgcaaaatatccaaagaa
atagcaaatttgggagatcaggtgggacctgtcaaagctgtacccttgtactctactctt
cccccagctatgcagcagaagatttttgagccagctccacctccgctcacagagggtggg
cctcctggaaggaagattgtggtatcaacaaatatagcagaaacttccttgacaattgat
ggtatagtctatgttattgaccctgggttttctaagcagaaggtctataacccaagggtt
cgagtcgagtctttgttagtatctccaatatcaaaagctagtgcacaccagagatcaggg
cgtgcgggaagaactcaaccagggaaatgttttagactttacactgagaaaagtttccat
aatgatcttcagccccagacctatcctgaaattttaagatcaaatcttgccaacacagtc
cttacattgaagaaactgggtatagatgacttggtgcattttgatttcatggacccccct
gctcctgagaccttgatgcgtgcactggaagtgttgaattacttgggtgcactggatgat
gatggtaacttaacaaagctgggggaaattatgagtgaatttcccttggacccacagatg
tcaaagatgcttgttgtgagtcctgaattcaattgttcaaatgagattctgtcagtctct
gccatgctttcagtacccaattgctttgtccggcccagggaggcacaaaaagcagcggat
gaagcaaaagctaggtttgggcatattgatggagatcatctgaccctcttgaatgtgtat
catgcttacaagcaaaacaatgaggatccctcttggtgctacgataacttcgttaaccac
agggcgctgaaagcagctgataatgttagacaacaactagtgcgcatcatggcccggttc
aacctgaagttatgcagtactgacttcaacagtcgtgactactatgtcaacataagaaag
gctatgttagcgggatattttatgcaggtagctcacctggagcgcacaggacactacttg
acagtaaaagacaaccaggtggtgcacttgcatccgtcaaattgcctagaccacaagcct
gaatgggtcatctacaatgaatatgttctaaccagcaggaattttatacgtactgtgaca
gacatacgtggggagtggctagttgatatagcaccacattactatgatttatccaatttt
ccacaatgcgaggccaagcgtgttcttgagaggctttacaagaagcgggagagggaaaat
gaggaagccaggagtcgtaaatga
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