Prosopis cineraria: 129309811
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Entry
129309811 CDS
T09047
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit B
KO
K07466
replication factor A1
Organism
pcin
Prosopis cineraria
Pathway
pcin03030
DNA replication
pcin03420
Nucleotide excision repair
pcin03430
Mismatch repair
pcin03440
Homologous recombination
pcin03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
pcin00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
129309811
03420 Nucleotide excision repair
129309811
03430 Mismatch repair
129309811
03440 Homologous recombination
129309811
03460 Fanconi anemia pathway
129309811
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pcin03000
]
129309811
03032 DNA replication proteins [BR:
pcin03032
]
129309811
03400 DNA repair and recombination proteins [BR:
pcin03400
]
129309811
Transcription factors [BR:
pcin03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
129309811
DNA replication proteins [BR:
pcin03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
129309811
DNA repair and recombination proteins [BR:
pcin03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
129309811
MMR (mismatch excision repair)
129309811
DSBR (double strand breaks repair)
HR (homologous recombination)
129309811
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
CDC24_OB3
Rhabdo_glycop_CD
C1_1
DUF5651
Motif
Other DBs
NCBI-GeneID:
129309811
NCBI-ProteinID:
XP_054807507
LinkDB
All DBs
Position
Unknown
AA seq
625 aa
AA seq
DB search
MSKSVTPDAISILFANPSPDSSLELPEIVVQVLDLKQSGNRYMFTASDGKLKLRAILPSS
QNSQVLSGNIQNLGLIRITDYTLNDIPNKSEKYLIVTKCEPVSPALETEIKHEVEREETG
IILKRQQEDKMKSQIKTEGAGLLLKPKQDIVVKSAAQIVHEQHGNMVPAARMAMTRRVRP
LVSLNPYLDNWTIKVRVTNKGIMRTYKNARGEGCVFNVELTDEDGTQIRATMFNVAARKF
YEKFVLGKVYYISKGTLKVANKQFKTVQNDYEMTLNENSEVEEATNEESFVPETRFKFVP
IDQLGQYVNRNELVDVIGVVQNVSPTMSIRRKSNNETVPKRDITIADETKKTVIVSLWNE
NAINVGQELSDLAGNSPLVAIKSLKVGDFQGVSLSTIGRSLVLANPDIPEAKKLRSWYES
EGKDASLASMSSGTSSVSSNGMRSVFSDRVSLFHITSRPSLGEDKPAFFSVRAHISHIKP
DQTMWYRACKTCNKKVTETIGAGYWCERCQKNYEECSLRYIMVVKVADRSGEAFISVFNE
EAEKIVGCPAEELDSLKSQEGEDSLYQLKLKQATWTPYLFWVSVSQNEYNNEKRQRITAR
AVVPMDFAAESRFLLEEISKMKFSQ
NT seq
1878 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaagtcagtgactccggatgcgatttcgatcctctttgcgaatccctccccggat
tcttcattggagcttcccgagatcgtcgtccaagtcctggatctcaagcaaagcggtaac
agatatatgtttactgcaagcgatgggaaattgaagttaagagcaattctaccctcaagt
cagaactcgcaggtcctctcaggaaatattcagaacctgggtcttattcgcatcactgac
tacactctcaacgacatcccaaacaagtcagagaaatatcttattgtgacaaaatgtgaa
ccggtctcccctgcacttgaaacggaaataaagcatgaggtagagagggaggaaaccggc
attattttgaaacgacagcaagaggacaaaatgaaaagtcagattaaaactgaaggagca
ggccttcttttgaaaccaaagcaagacatcgtggtcaaatctgctgctcagatcgtacat
gaacaacatggaaatatggttcctgcagctcgaatggccatgactcgtagggtgcgtcct
ctggtttccttaaacccttatctggataactggacaataaaagttcgggttacaaacaaa
ggaatcatgcgcacgtataagaatgcaagaggggaaggttgtgtcttcaacgtggaactg
acagatgaagatggcactcaaattcgagctacaatgtttaatgtggctgcaaggaagttc
tatgaaaagtttgtattggggaaggtttactatatttcaaagggtactttaaaagttgca
aacaagcagttcaaaaccgttcaaaatgattacgaaatgacactaaacgagaactctgaa
gtggaagaggcaaccaatgaagaaagcttcgttccagaaactaggttcaagtttgtcccg
attgatcagctgggtcagtatgtcaaccgaaatgaacttgttgatgtcattggagttgtt
caaaatgtgtcccctacaatgagcatacgccggaagagcaacaatgaaactgtcccgaag
cgtgatattactattgctgatgagacaaagaaaacagttatcgtgtctttgtggaatgag
aatgcgattaatgtagggcaagaattgtcggatcttgctggtaattctcctttagtggca
atcaaatcgctcaaggttggggactttcaaggtgtttccttgtcgactataggtagaagt
ctagtgctggcaaatccagacatacctgaagcaaagaagcttagaagctggtacgaatct
gaaggtaaagatgcatcattggcatccatgagctctggaacgagttcagtatcctcgaac
ggaatgagatcggtgttttcagaccgtgtctcactttttcatattacctcaagaccgtcc
ttaggggaggacaagcctgcatttttcagtgtcagggcacatataagccatatcaagcct
gaccagacaatgtggtaccgggcttgcaaaacttgcaacaagaaagtcaccgaaaccatt
ggtgcagggtattggtgtgaaagatgccagaaaaattatgaagagtgcagtttaagatac
attatggttgtaaaagttgctgatagaagtggtgaagcctttatatcagtcttcaacgaa
gaagctgagaagattgttgggtgccctgctgaagaactagatagcctgaagtcacaggag
ggggaagatagtctatatcagttgaaactgaaacaagcaacatggactccttatcttttc
tgggtcagtgtttctcagaatgagtataataacgagaaaaggcagaggataacagcccgg
gcagttgttccgatggactttgctgccgaatcaagatttctcttggaagagatatcaaag
atgaaattttctcaataa
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