Prosopis cineraria: 129311152
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Entry
129311152 CDS
T09047
Name
(RefSeq) exosome complex exonuclease RRP44 homolog A
KO
K12585
exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-]
Organism
pcin
Prosopis cineraria
Pathway
pcin03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcin00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
129311152
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcin03019
]
129311152
Messenger RNA biogenesis [BR:
pcin03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
129311152
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNB
OB_Dis3
PIN_4
Rrp44_CSD1
OB_HELZ2
Rrp44_S1
CSD2
OB_RNB
Acid_phosphat_B
Motif
Other DBs
NCBI-GeneID:
129311152
NCBI-ProteinID:
XP_054809171
LinkDB
All DBs
Position
Unknown
AA seq
935 aa
AA seq
DB search
MLHNKSFVKKTKAGKVLKQVREHYLRDDIYCGAPFCKTCDTSAARLSGSASTVLVLDTNV
VLNQIDLLENPAIDDVVILSIVLEEVKNKNMSVYNRIRSICGNSARKFFVFSNEYHRDTY
IKEMSGETKNDRNDRAIRVATQWYQSHLGDAVKVLLITNDRENKRKATEEGVLAETVESF
VKSLGRSDLLDLLVRPSSEDVEMEEVEDVRPSKRKVIYIEHKPMSEITSGLHRGIYHQGK
LRVNRYNPFEAYVGSESIGDEIIIFGRTNMNRAFDGDIVAVELLPQDQWHEEKSLSIACD
EDEDEDEDVHLVPSSADDAPRTLPQQGSTGGINPVSSRPSGRVVGIIKRNWHSYCGSLEP
MPMPAGSGGVAHALFVSKDRRIPKIRIQTRQLDNLLDKRIIVAVDSWDRQSRYPSGHYVR
TIGEIGDRDTESEVVLIENDINSRPFSSQVLACLPPLPWSVSSEDLSNPIRLDLRNLHVF
SVDPPGCKDIDDALHCSALPNGNFEVGVHIADVTNFVHPGTPLDDEASQRGTSVYLVERR
IDMLPKPLTEDICSLRADVERLAFSVIWEMTAEADIISTKFTKSVIRSSAALSYVEAQAR
MDDRRLVDPLTTDLRNMNGLAKKMRLRRIERGALTLASAEVKFQIDTETHDPLDIGMYQI
REANQMVEEFMLAANVSVAEQILESFPSCSLLRRHPTPTREMLEPLLCTASAVGLHLDVS
SSKALADSLDHAVGDDPYFNKLIRILATRCMTQAVYFCSGDLSPPEYHHYGLAAPLYTHF
TSPIRRYADVIVHRLLAASLGISKLPSIFQDRLQLTSISDNLNYRHRNAQMAGRASVELH
TLIYFRNRPTDTEARIVKIRSNGFIVFVPKYGIEGPVYLMSRTEKGGGEWYVDEQQQKIK
KMDGSLSYSILQPVVIHMEVVEPQPNRPKLQLTLI
NT seq
2808 nt
NT seq
+upstream
nt +downstream
nt
atgctccataacaagtctttcgtcaagaaaactaaggctggaaaagtgttgaagcaagtc
agggagcactatctgagagacgacatatattgcggagctccattttgcaaaacatgtgat
acttcagctgctcgcttgagtggttctgcttctacagttctcgttctggacaccaatgtc
gttctcaaccagattgatttgctggagaatcccgccattgatgatgttgttatactgtcc
attgtgctggaagaggttaagaacaaaaacatgtctgtttacaatcgaataagatccatc
tgtggcaattcggcaaggaaattctttgttttctccaatgaataccatagggatacatat
atcaaggagatgagtggtgaaacaaaaaatgacaggaatgatagagctatccgagtggct
actcaatggtaccagagtcatcttggtgatgcagtgaaggttttgcttataactaatgac
agagagaacaaaaggaaggctactgaagagggagttcttgcggagacagttgagtccttt
gtaaaatccctgggccggtcagatttacttgacttgcttgtgcgaccttcatctgaagat
gttgaaatggaagaggtggaggatgtacgaccatccaaaaggaaagtcatctacatagag
cataagccaatgtcagaaattacttctggtttgcatcgtggaatatatcatcaaggaaaa
cttcgtgtaaatcgttataatccatttgaagcatatgttgggagtgagagcattggcgat
gaaataataatttttggacgtacaaacatgaaccgggcttttgatggtgatatagttgct
gttgaacttctacctcaagaccagtggcatgaggagaaatctctgtccatagcttgtgat
gaggatgaggatgaggatgaggatgttcatctagttccaagcagtgctgatgatgctcct
agaactcttcctcagcaaggttctactggaggaataaatcctgtatccagccgtccttct
ggccgtgttgttggcattataaaacgcaactggcattcttattgtggatctttggaacca
atgcctatgcctgcaggaagtggtggtgttgcccatgctttatttgtgtccaaagatcgc
agaatacccaaaattcgaatccaaacccgtcaacttgacaaccttttagacaagaggatt
attgtggcggttgattcttgggatcgtcaatctcgatatccatcaggccattatgtgcga
actataggagagataggtgacagagatactgagagtgaggtagttttgattgaaaatgat
ataaattcaaggccgttctcttcacaagttcttgcatgcttgccacctttgccttggtca
gtctcttctgaagatttgtcaaatccaattaggctggatttgcgaaatctgcatgtcttc
agtgtggatcctccaggatgcaaggatattgatgatgcactccactgttctgctcttccg
aatgggaactttgaagttggagttcatattgctgatgtgacaaactttgtgcatcctggc
actccacttgatgatgaggcttcacaaaggggtacatctgtctaccttgttgagcgacgg
atagacatgctccccaaacctctaacagaggacatttgttctctccgagctgatgtggaa
agactagccttctccgtcatatgggaaatgaccgctgaagcagatattatctctacaaaa
tttacgaaaagtgtcataagatcttctgcagcattgtcttatgttgaagcacaggcaaga
atggatgataggcgactggtggatccactaactactgatttgaggaatatgaatggttta
gctaagaaaatgaggctacggcgtattgagagaggagcactaactcttgcttctgctgaa
gtgaaatttcaaattgataccgagacccatgatcctcttgatatcggtatgtaccaaatt
cgggaagcaaaccaaatggtggaggagtttatgcttgcagctaacgtttctgttgcagaa
caaattcttgagagttttccttcgtgctcattattaaggcgtcatccaactccaacaaga
gagatgcttgaacctttgctgtgtactgcttctgcagttggtctccacttggatgtctca
tcatcaaaagcattggctgactctcttgaccatgctgtgggtgatgatccatatttcaac
aagttaatccgcatactggcaacgagatgcatgactcaggcagtttatttttgtagcggg
gatctaagccctccggaatatcatcattatgggcttgcagcacctctatatactcatttc
acctcacctattagaagatatgcagatgtcattgttcacaggctgcttgctgcgtcctta
ggaatatctaagctaccttcaatatttcaagacaggctccagctcactagtatttcagat
aatctaaattatcggcacaggaatgcacaaatggcaggccgggcctctgtagagctacac
acactcatttatttccgaaacaggccaactgatacggaggctagaatagtgaaaataaga
tccaacgggtttattgttttcgttcccaaatatggcatagaagggcctgtgtatttgatg
tcaagaactgaaaagggaggtggggaatggtatgttgacgagcaacagcagaagattaaa
aagatggatggtagcctttcgtacagcattctgcagccagttgtaatacatatggaggtt
gtggagccccagcctaaccggccaaaacttcagcttactctcatctaa
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