Prosopis cineraria: 129311277
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Entry
129311277 CDS
T09047
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH5, mitochondrial isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
pcin
Prosopis cineraria
Pathway
pcin03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcin00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
129311277
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcin03019
]
129311277
03012 Translation factors [BR:
pcin03012
]
129311277
Enzymes [BR:
pcin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
129311277
Messenger RNA biogenesis [BR:
pcin03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
129311277
Translation factors [BR:
pcin03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
129311277
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
dsrm
HA2_N
nSTAND3
AAA_22
AAA_19
AAA_11
APOBEC_C
ATPase
AAA_23
Dicer_dimer
NPHP3_N
PhoH
Motif
Other DBs
NCBI-GeneID:
129311277
NCBI-ProteinID:
XP_054809446
LinkDB
All DBs
Position
Unknown
AA seq
1211 aa
AA seq
DB search
MISSNSPSLHSSFTRGNIGTLIHRNRRPVLMMKDRPPPSSYGSVYIPPHQRLRSVVTSAG
YISSAPVDFKLHGSEGAVINPIGINASATATLPHSQTKLQEQAPCKLNSRCVSAYDDGIS
EEGSDRELETSSQPSASPNDNTDEWKQKFIMLLNDKSRQELISREKKDRRDFEQLAALAT
RMGLYSHMYSKVVVFSKVPLPNYRYDLDDRRPQREVSVPLNVLKRVDAYLKQYLSKKSGM
KESFSDLSSVRSRSSGNFGTDEGLFEQPDLQASSRAVVEKILRRRSLQMRDQQTNWQVIF
PENESPEGRTMLEFRRSLPAYKEKEAILSAISSNQVVIISGETGCGKTTQIPQFILESEI
DSVRGALCNVICTQPRRISAMSVSERVAFERGEKLGESVGYKVRLEGMKGRNTHLLFCTT
GILLRKLLADRNLKGMTHVIVDEIHERGMNEDFLLIVLKDLLPRRPELRLVLMSATLDAE
LFSSYFGGAPVINIPGFTYPVRTYFLENILEMTGYRLTPSNQIDDYGQERMWKLNKQTPR
KRKSQIASAVEDAVRAADFQDYSPQTRESLSCWNPDCIGFNLIEYILCNVCENERPGAVL
VFMTGWEDISSLKDKLLANPVLGDPSRVLLLTCHGSMASSEQSLIFQEPEDGVRKIVLAT
NIAETSITINDVVFVIDCGKAKETSYDALNNTPCLLPTWISRVSAQQRRGRAGRVQPGEC
FHLYPRCVYDTFAEYQLPEILRTPLQSLCLQIKSLRLGSISEFLSRALQSPELLAVQNAI
EYLKVIGALDENENLTDLGRYLTMLPMEPKLGKMLILGAIFNCLDPVLTIAAGLSVRDPF
LTPLDKKDLAEAAKSQFSCHYSDHLTLVKAYEGWKDAEMDLAEYEYCWKNFLSAQSMKAI
DALRQEFFSLLKDVGLVDSNMTSCNAWSHDVHLIRAVICYGLYPGICSVMHNEKSFSLKT
MEDGQVLLYSNSVNARESKIPYPWLVFNEKIKVNSVFLRDSTAVSDSVLLLFGGGILKEE
TDGHLKMLGGYLEFFMRPAVADMYQIIRRELDGLIQIKLLCPRMDIHSFHELLSAVRLLI
SEDHCEGRFVFNHQVLKPSKLSLVPLQPALGSRTESGPGGDNSKSQLQTLLTRAGYAAPT
YKTMQLKNNQFQATVEFNGMRILGQPCNNKKSAEKDAAAEALQWLVGSRQTGNECINHVS
MLLKKSKKDHN
NT seq
3636 nt
NT seq
+upstream
nt +downstream
nt
atgatctcgtctaattctccttctctgcactcatctttcactcgggggaacatcggaacc
ctcatacacagaaatcgtcgtccggtcctcatgatgaaggatcggcctccgccatcctcc
tacggctccgtttacattcctcctcaccaacgtctgcgctctgtcgtcacctccgccggt
tacatctcgtctgctccggtggacttcaagctccatggatccgaaggggcagttataaac
cctataggcatcaatgctagtgccactgctactctgcctcactcgcagaccaagttgcag
gaacaagctccatgtaagttgaattcgcgctgtgtttctgcttatgatgatgggatttcc
gaggaaggatcggatcgtgaattggagacgtcttcacaaccgagtgcttcacccaatgat
aacactgatgagtggaagcagaaatttatcatgcttttaaatgacaagagtagacaagag
ttgatctcaagggagaaaaaagatagacgtgattttgagcaactagcagccttggcaacc
agaatgggattgtatagtcatatgtattcaaaagttgttgtcttcagtaaggtcccactg
ccaaattacagatatgatttggatgatcgaagaccacagagggaggtgagtgtgcctctt
aatgtgttgaaaagagttgatgcatatctcaaacaatatctatccaaaaagtctgggatg
aaggaaagcttttcagatttgtcatctgtgagatcaagaagtagtggtaattttggtacc
gatgaagggctctttgagcaacctgatcttcaagcttccagtagggcagttgtagagaaa
attctccggagaagaagtttacaaatgcgtgatcaacaaacaaattggcaggttatcttc
cctgaaaatgaatctccagaaggaaggacaatgctggagtttcgtagaagtctccctgca
tataaagagaaggaagcaatattgtcagctatatcaagtaatcaggttgtcatcatctca
ggtgaaacaggttgtggcaagacaacacaaattcctcaattcattttagaatctgagata
gattctgtccgtggagctctctgtaatgttatatgcacacagccaagacgcatttcagcc
atgtctgtttctgaaagagttgcctttgagagaggagagaaattgggtgaatctgttgga
tataaagttcgcttggagggaatgaaagggaggaatacccatcttctgttttgcaccaca
ggcattttattaagaaagttgctagctgatagaaacttgaaaggtatgacgcatgttatt
gtggatgaaattcatgagcgcgggatgaatgaagattttctcctcattgttcttaaagat
ctccttccccgcagaccagaactgagattagtcttgatgagtgccacccttgatgcagag
ctcttctcctcttactttggtggagctccagttataaatattccgggctttacataccct
gttagaacttatttcttagagaacattctggagatgacgggctacagattaaccccttcc
aatcaaattgatgattatggtcaagaacggatgtggaaattgaacaaacagaccccaaga
aaaagaaaaagccaaattgcttctgctgtagaggatgcagtaagagctgctgattttcag
gattacagcccacagacacgggaatctttgtcatgttggaatcctgactgtattggtttt
aacctcatagaatatatcttgtgcaatgtatgtgagaatgaaaggcctggagctgttttg
gtttttatgactggatgggaggatataagctctctcaaagataagcttctagcaaatcct
gtattaggagatccaagtcgagtcttgttgcttacttgccatggatcaatggccagttca
gagcagagcttaatttttcaagagcctgaagatggagtaaggaaaatagtgctagcaacc
aatattgctgaaacaagtattacaataaatgacgttgtatttgttattgactgtggaaag
gcaaaagaaacatcatatgatgcgctgaataatacaccttgtttgcttcccacctggatc
tctagggtttcagctcaacaaagaagaggaagagctggtcgtgttcaacctggagaatgt
ttccatctctatcctagatgtgtatatgatacttttgcagagtatcagttgccagaaatt
ctgaggacacctctgcaatctctctgtttacaaatcaaaagtttgagacttggaagtata
tctgagttcttgtctagagctttgcaatctcctgagttactagccgtacaaaatgcaatt
gaatatttgaaggtaattggggctttggatgagaatgaaaatcttactgatcttggccgg
tacttgacgatgcttccaatggaaccgaaacttggcaagatgctaatattaggtgctatc
ttcaattgtctagatcccgtgttaactattgctgctggcctcagtgtgagagatcctttt
ctaacaccattagataaaaaagatcttgcagaggccgcaaaatctcaattttcctgtcat
tatagcgatcaccttactcttgttaaggcttatgagggctggaaagatgctgaaatggac
cttgctgagtatgaatactgctggaaaaattttctttcagcacaatcaatgaaagctatt
gatgctcttcgccaggagtttttctccctgcttaaggatgttggattagttgatagcaac
atgaccagctgcaacgcatggagccatgatgtgcatcttatccgagcagttatttgttat
ggcctatatcccggaatttgctctgttatgcataatgagaagtcgttttcgctgaaaaca
atggaggatggtcaagtactactatattcaaactcagtaaatgctcgggaaagcaaaatt
ccgtatccatggctagtttttaatgagaaaattaaagtgaactcagttttcctccgtgat
tcaactgctgtgtctgattcagtgttgcttctttttggtggaggcatcttgaaggaagaa
actgatgggcacttaaaaatgttaggaggatatttagagttcttcatgagacctgctgtt
gctgacatgtaccagattataaggagagaacttgatggtttaattcaaatcaagctactg
tgtccaaggatggacatacactcatttcacgagctcctttctgctgtgcggttgctgatt
tcggaggatcattgcgaaggcagatttgtattcaatcatcaggtcttgaaaccgtcaaag
ctgtctttagtgcccttacaaccagcattgggttcaaggactgaaagtggacctgggggt
gataattctaaaagtcagcttcaaacattgcttacaagggcaggatatgctgctcccacg
tacaagactatgcaattgaagaacaatcaatttcaagctacagtcgagtttaatggaatg
cgtatattgggtcaaccttgcaacaataagaagagtgcagaaaaggatgctgcagctgag
gctcttcagtggctggttggatcaaggcagacaggtaatgagtgcatcaatcatgtatcg
atgttgctgaagaaaagcaagaaggatcataattaa
DBGET
integrated database retrieval system
