Prosopis cineraria: 129311369
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Entry
129311369 CDS
T09047
Name
(RefSeq) THO complex subunit 2 isoform X1
KO
K12879
THO complex subunit 2
Organism
pcin
Prosopis cineraria
Pathway
pcin03013
Nucleocytoplasmic transport
pcin03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pcin00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
129311369
09122 Translation
03013 Nucleocytoplasmic transport
129311369
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcin03019
]
129311369
03041 Spliceosome [BR:
pcin03041
]
129311369
Messenger RNA biogenesis [BR:
pcin03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
129311369
Spliceosome [BR:
pcin03041
]
Complex C
Other components
EJC/TREX
129311369
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
129311369
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Tho2
THOC2_N
Thoc2
FlxA
FapA
LIM_bind
Motif
Other DBs
NCBI-GeneID:
129311369
NCBI-ProteinID:
XP_054809622
LinkDB
All DBs
Position
Unknown
AA seq
1881 aa
AA seq
DB search
MALPPIECKYVTDDCVREWKSGNPSLKVSEPVPLLRFLYELCWTMVRGELLFPKCKVALD
SVIFSDKSSAEKVASNFADIVTQMAQDHTMSGEYRTRLMKLARWLVESEVVPIRLLQERC
EEEFLGEAELIKIKAQDLKGKEVRVNTRLLYQQTKFNLLREESEGYAKLVTLLCRDTEAP
TPKAAAATIGIIKSLIGHFDLDPNRVFDIVLECFELQPDNNVFLELIPIFPKSHASQILG
FKFQYYQRMEVSSPVPFGLYRLTALLVKQEFIDLDSIYAHLLPKDEEAFEHYNIFSSKRL
DEANKIGRINLAATGKDLMDDEKQGDVTIDLFAASDMETEAVDERVPELENNQTLGLLTG
FLSVDDWYHAHFLFDRLSLLNPVEHTQICDGLFRLIEKSISSAYDAVRQAHLQNPGSSLR
GSNDAMDVENYSGHGSFIDLPKELFQMLACVGPYLFRDAILLQKVCRALKGYYLSALQLG
SGGEVALNPEPNVNRNPRLHLKEARLRVEDALGTCLLPSLQLIPANPAVGQEIWELMSLL
PYEARYRLYGEWEKDDERNPMLLAARQTAKLDARRILKRLAKENLKQLGRMVAKLAHANP
MTVLRTIVHQIEAYRDMITPVVDAFKYLTQLEYDILEYVVIERLALGGRDKLKDDGLNLS
DWLQSLASFWGHLCKKYPSMELRGLFQYLVNQLKKGQGIELVLLQELIQQMANVQYTENL
TEEQLDAMAGSETLRYQATSFGMTRNNKALIKSTSRLRDALLPKDEPKLAIPLLLLIAQH
RSLVVVNADAQYIKMVSEQFDRCHGTLLQYVEFLCSAVTPASTYANLIPSLDEIVHLYHL
DPEVAFLIYRPVMRLFKCHRSPDVCWPLDDVNATSEASTNSETDPVDHTGRMVLDLGSAQ
KAIRWSDLLDTVKTMLPSKAWNSLSPDLYATFWGLTLYDLYVPKNRYESEIAKLHANLKS
LEELSDNSSSAITKRKKEKERIQESLDRLSSELRKHEENVASVRRRLSHEKDKWLSSCPD
TLKINMEFLQRCIFPRCTFSMPDAVYCAMFVHTLHSLGTPYFNTVNHIDVLICKTLQPMI
CCCTEYEAGRLGRFLFETLKIAYYWKSDETIYERECGNMPGFAVYYRYPNSQRVTYGQFI
KVHWKWSQRITRLLIQCLESSEYMEIRNALIMLTKISSVFPVTRKSGINLEKRVAKIKSD
EREDLKVLATGVAAALAARKPSWVTDEEFGMGYLELKPAPAMTSKSSPGISTAVQSGTGP
NVSQMESSNGKHLDSGNTVKEQLVRTKPSEGKSERTESFPATKSDSVHVKLKGSSLVNGL
DAQSSLPSAGHSGTSRAVENQKQVDESTNRSLDENVTRVAESRTSTKRSVPAGPLSKTSK
QDPLKEDGRSGKSISRTSASSSTDKDLQTHASEGRHAGTTNSSLMNVNGSSASASTKGLA
PSARISLDSSGSESRADVGAVKSSDMRASMVKDDGNDVSDLVKGPSSRVPHSPRHENVAV
ASKSGDKVQKRANSAEEPDKLVKRRKGDSEARDLENEPRFSERERLIDIRLSDDKSGPDE
LSVYRAGDKQLDRLKDKGNERYEREHRERLDRMDKSRGDEFIADKVKDRSLERYSRERSI
ERMQERGNERSFNRLLEKAKDDRNKDDRSKLQYGDATSEKSHSDDRFHGQSLPPPPPLPP
NMVPQSVSAGRRDEDADRRYGATRHSQRLSPRHEEKERRRSEENYLVSQDDAKRRKEDDF
RDRKREERDGLTLKEEREREREREREKANILKEDLDLTAASKRRKLKREYLPTGEPGEYS
PVAPPPPPAGMGMSQAYDGRDRGERKGPVMQHANYMDEPVLRIHGKEVASKMNRRDSDPL
YDREWDDEKRQRADQKRRHRK
NT seq
5646 nt
NT seq
+upstream
nt +downstream
nt
atggctcttccgcccatagagtgcaaatacgtaacagatgactgtgttcgtgaatggaag
agtggcaacccctctctcaaggtctctgaacccgtcccattgctacgctttctctatgag
ctttgctggactatggttcggggtgaattgctgtttccgaagtgtaaagtagcactggat
tctgtcattttctcggataaatcttcggccgaaaaagtagcttcaaatttcgcggatata
gtaacccagatggcacaggatcatacgatgtctggggagtatcgcacccgtctcatgaaa
ctggcaagatggcttgtggaatctgaagtggtcccaattaggctactccaggaacgttgt
gaggaagaatttttgggggaggctgaactgatcaaaataaaggctcaggatttgaaggga
aaagaggttagagttaatacacggcttctttaccagcagaccaaattcaatcttcttaga
gaagagagtgaaggctatgcaaaactggtcacccttctttgccgggatactgaagctcca
acccccaaagcagctgcagctaccattggcattattaagtcattaattggccactttgat
ttggacccaaaccgtgtttttgatattgttcttgagtgtttcgaacttcagcctgataac
aatgtcttcttagagttgattcctatttttcctaagtctcatgcttcccagattcttgga
tttaaatttcaatattatcagcggatggaagtcagcagtcctgtaccatttgggctatat
agactgacagccttgctggtgaagcaagaatttattgatcttgatagcatatatgcccac
ctacttcccaaggatgaagaagcatttgagcattataacatattttcttccaagcgcctt
gatgaggctaacaaaattggaagaataaaccttgctgctactggaaaggatttaatggat
gatgagaaacagggggatgtcactatagacctctttgctgcttcagacatggaaactgag
gcagttgatgaacgagtacctgagcttgaaaataaccaaacgttgggcttgctgactggc
tttctttcggtggatgactggtatcatgcacattttttatttgatcgtctctcacttctc
aatccagtggaacatactcaaatatgtgacggtttgtttaggcttattgagaaatcaatt
tcttcagcctatgatgctgttcgtcaagcacatcttcaaaaccctggatcttctttgaga
ggaagcaatgatgctatggatgtagaaaattattccgggcatggttctttcatagacctt
ccaaaggaactttttcagatgcttgcttgtgttggaccttatctcttccgtgatgctata
ttgctgcagaaggtttgtagggcattgaaaggttattacctttctgcccttcagctggga
agtggtggtgaagttgccctgaatcctgaacctaatgtgaatagaaatcctcgattacac
ctcaaggaagctaggctaagggtggaagatgctttagggacatgtctcctaccttctttg
cagttgattcctgccaatccagcagtcgggcaggaaatttgggaacttatgagtcttctt
ccttatgaggctcgatatcgtttatatggtgaatgggaaaaagatgatgaacgcaatcct
atgctcttggctgcaagacaaactgccaagttggatgccagaaggattttgaaacggcta
gcaaaagaaaatttgaagcagcttggtcggatggttgcaaaattagctcatgctaatcct
atgactgtacttcgaacaattgttcatcagattgaggcttacagagatatgattactcct
gtagtggatgcattcaagtatttgactcagcttgagtatgatatactggaatatgttgtg
attgaacgcctggcacttggaggacgtgataagctaaaggatgatggtcttaatttgtca
gattggcttcagtcgttagcttcattttggggccacctgtgtaagaagtatccatcaatg
gaattgcggggccttttccagtatctcgtgaatcagttgaagaaaggtcaaggaattgag
cttgtacttctgcaggagctcatccaacaaatggcaaatgtccaatatactgaaaacttg
actgaggaacagctggatgctatggcggggagtgaaactctcagatatcaggcaacttct
tttggaatgactcgaaataacaaggctttgatcaagtcaactagcagactgagagacgca
ttacttcccaaagatgaaccaaagttggcaatccccctcctattgcttattgctcaacac
cgttcgctggttgtcgtcaatgcagatgcacaatacattaagatggttagtgagcagttt
gatagatgtcatggaacacttcttcaatatgtggagtttctttgcagtgcagtgacacca
gcatcaacttatgctaatcttattccttcgctcgatgagatagtccacctgtatcacctg
gacccagaggttgctttcttgatataccgtcctgtgatgaggctttttaagtgtcacagg
agtccggatgtatgttggcctctagatgatgttaatgcaacaagtgaggcttctacaaat
tctgagactgatcctgtagaccatactggcagaatggttttggatcttggctcagctcag
aaggctataaggtggtcagatcttcttgatactgtcaaaactatgttgccttcaaaagca
tggaatagcctatcccctgatctttatgctaccttttggggtctcacgttatatgattta
tatgttccaaaaaatcgttatgagtcagaaattgccaagctgcacgctaatcttaaatct
ttggaggaactttcagacaattcaagctcagcaatcactaagaggaagaaggaaaaggaa
aggatccaagaatctcttgatcgtttgagtagtgaacttcgtaaacatgaagaaaatgtt
gcgtctgttcgtagaaggctgtctcatgaaaaggacaagtggttgagttcttgtcctgat
accttgaagatcaatatggagtttcttcagagatgtatttttccacgctgcactttcagt
atgccagatgctgtctattgtgccatgtttgtgcacacccttcattctcttggaactcca
tattttaataccgtcaatcacatagacgttctgatctgtaagactctacaaccaatgatt
tgctgctgcacagaatacgaggcaggcaggcttggcaggtttctgtttgagacattgaag
attgcttactattggaagagtgatgaaactatttatgaacgtgaatgtggaaatatgcca
ggctttgctgtttactacagatatccaaacagccaacgagttacatatgggcaattcatc
aaggtacattggaaatggagccagagaatcacaaggttactcattcagtgtctagaatct
agtgagtacatggagattagaaatgctctcataatgttgacaaaaatttctagtgttttc
cctgttacgaggaagagtgggattaatcttgagaaacgggtggcgaagataaaaagtgat
gaaagggaagatcttaaggttttggcaactggtgttgctgcagcattagctgctcgaaag
ccttcttgggtcaccgatgaagagtttggaatgggttatcttgagttgaaaccagcgcca
gctatgacttctaaatcatctccgggtatttcaacagccgtacaaagtgggactggtcca
aatgtttctcagatggaatcttccaatggaaaacatttggactctggaaatactgtcaag
gaacaactggttagaacaaaaccttcagagggtaagtcagaaagaactgaaagctttcca
gccactaaatctgattctgtgcatgtaaaactcaagggtagttcattggtgaatggacta
gatgctcaatcatccttgccttctgctggacattctgggacatcaagagctgtagaaaac
caaaagcaagtagatgaatccacaaacagatcattggatgaaaacgtgaccagagtggct
gagtcaagaacttcaacaaaacgctcagtgcctgctggcccactttcaaagacctcaaaa
caagatcctttgaaagaagatggtagatctggaaaatccatttctagaacttctgcttcc
tctagtactgacaaggatctacaaacgcatgcatcagagggaagacatgctggaactacc
aattcttctttgatgaatgttaatggtagttctgcttctgcttctactaaaggtttggct
ccatcggcaagaatttcgttagattccagtggtagtgaatcaagagcagatgttggagct
gtcaagtcttctgatatgagggcttctatggtgaaggatgatgggaatgatgtttctgac
ttggtgaaaggaccctcatctcgtgtacctcattctccaaggcatgaaaatgtagctgtt
gcttcaaaatctggtgataaggttcagaagagagctaattctgctgaggaacctgacaaa
ctagttaagcgccggaaaggggattcagaggcaagagatttagagaatgaacctcgattt
tctgaaagagagaggctgatagatattagattgtctgatgacaaatcaggacctgatgaa
ttgagtgtctacagggcaggtgataagcaactggataggctgaaggacaaaggcaatgag
agatatgaaagggaacacagggaaagattggaccgaatggataagtcacgtggtgatgag
tttatagctgacaaagttaaggataggtcattagaaagatatagtagagaaagatctatt
gaaagaatgcaagagaggggtaatgaacggagtttcaatagactacttgagaaggccaag
gatgatagaaacaaggatgatagaagtaaattgcagtatggtgatgcaacttcagaaaaa
tctcattcagatgatcgcttccatggccaaagcttgcctccaccaccccctttaccacca
aatatggttcctcagtctgttagtgctggtaggcgtgatgaagatgctgatagaaggtat
ggagctacaaggcattctcagagactttctccaaggcatgaagaaaaggagcggagacgg
tccgaagaaaattacttagtttcacaggatgatgctaaacgtagaaaagaagatgatttc
cgagatcggaagcgggaggaacgggatggattgacattgaaggaagagagggaaagagag
agggaaagggaaagagagaaagcaaacattctgaaggaagacttggatttaacagctgca
tccaagaggcgtaaactcaagagagagtatctaccaacaggtgaaccaggtgagtactcg
ccagtggcccctccacctcctcctgctggtatgggtatgtcacaagcatatgatgggaga
gacaggggagagcgaaaggggcctgtaatgcagcatgcaaattacatggatgagccagtt
ctcaggattcatggcaaagaggttgccagcaagatgaatcgtcgtgattcagatcccttg
tatgaccgggaatgggatgatgagaagagacagagagcagatcaaaaacggcggcatcgg
aagtaa
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