Prosopis cineraria: 129311410
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Entry
129311410 CDS
T09047
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10 isoform X1
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
pcin
Prosopis cineraria
Pathway
pcin03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pcin00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
129311410
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pcin03041
]
129311410
Enzymes [BR:
pcin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
129311410
Spliceosome [BR:
pcin03041
]
Complex C
Other components
Step II factors
129311410
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
AAA_22
nSTAND3
AAA_19
PhoH
ABC_tran
TsaE
AAA_23
Motif
Other DBs
NCBI-GeneID:
129311410
NCBI-ProteinID:
XP_054809685
LinkDB
All DBs
Position
Unknown
AA seq
725 aa
AA seq
DB search
MPSMAQGGFRNFTGNQKPGSKLSNENQNRQTDFPSRRQKILQQRKSLPIASVEKRLVEEV
RKNDILIIVGETGSGKTTQIPQFLFDAGFCLDGKVIGITQPRRVAAVTVAKRVSEECGVE
LGQRVGYSIRFDDATSSSTRIKYMTDGLLLRESLLDPFLSKYSVIIVDEAHERTVHTDVL
IGLLKNVQHARSDILSDGQSLNSENKNVKSGMSLEKENGGQRGSFLRKHNNRNYAPLKLI
IMSASLDARVFSEYFGGAKAVHVQGRQFPVDIFYTRHAEADYLDASLITIFQIHLEEGPG
DILVFLTGQEEIESIERLINERLKQLPEGSQKLLTVPIFAALPSEQQMRVFAPAPSGFRK
VILATNIAETSVTIPGIKYVVDPGFVKARTYDPGKGMESLVVVPTSKSQALQRSGRAGRE
GPGKCFRLYPEIEFEKLEDSTKPEIKRCNLSNVILQLKALGVDDILGFDFIEKPSRAAII
KSLEQLFLLGALTDDCQLSDPVGIQMARLPLDPIYSKALILASQFNCLEEMLITVAMLSV
ESIFYAPRDKLEEARTAMKCFSSPEGDHLTLINVYRASNEFLEKRLMGMGNAKSEKALRK
WCKENFINSRSLKHALDIHKQISVNVEQMGLHVASCGDDTLQYRRCLAASFFLNAAVKQP
EGTYRALASGQVVQIHPSSVLFQQKPECIIFNELVQTNNKYIRNVTRIDYLWLTELAPQY
YAVQS
NT seq
2178 nt
NT seq
+upstream
nt +downstream
nt
atgccttccatggctcaaggaggattcagaaactttaccggcaaccagaagcctggcagt
aaattatccaatgaaaatcagaatcgtcaaactgatttcccttcccggagacagaagatt
ttacaacaaaggaagtcacttcctattgcttcagttgagaaaagacttgttgaagaggtg
cgaaagaatgatattttgataatcgttggtgaaactggaagtggaaagaccacacagatc
ccccaattcctgtttgatgctggattttgtcttgatgggaaagttattgggataactcaa
ccccggcgtgttgctgctgttactgtagcaaaacgggtttctgaggaatgcggtgttgaa
ttgggccaaagggttggttactctattagatttgatgatgctacttcaagttcaacaagg
attaaatacatgacagatgggttgcttctgagggaatccttgttggatccatttctttcc
aagtattctgttataattgttgatgaagcccatgagagaactgtacacactgatgtcttg
attggcctgcttaaaaatgtgcaacatgctcgttctgatattctttctgacggtcagagc
cttaactctgaaaacaagaatgtaaagagtggcatgtcattggagaaagaaaatggtggt
cagcgtggcagttttcttaggaagcacaataacagaaattatgctccactgaagctaatc
attatgtctgcaagccttgatgcgcgagtgttttctgagtactttggcggtgcaaaagct
gttcatgttcaagggaggcaatttcctgttgatatattttacactcgccatgcagaggca
gattatttagatgcttccttgataacaatattccagattcatttggaggagggccctggt
gatatactagtatttctgactgggcaagaagagattgaatctattgaaaggctcataaat
gagcgactcaagcagttacctgaaggcagccagaagcttctaactgtgcctatatttgca
gctcttccttctgagcagcaaatgcgagtgtttgcaccagctccatctggatttcgcaag
gtaatattagcaactaatattgctgaaacatcagtaacaattcctggaatcaagtatgta
gtagatcctggatttgttaaagcacgcacttatgaccctggcaaaggaatggaatctttg
gttgtggtacctacatccaagtcccaagctctgcaaaggagtgggcgtgcagggcgtgag
ggacctggaaaatgttttcgtctctatccagaaattgaatttgagaaactcgaggactca
acaaagccagagattaagcgatgcaacctctccaatgttattttgcagcttaaggcttta
ggtgttgatgacatactagggtttgatttcattgagaaaccttcaagggcagctatcatc
aaatcattggagcagctattcttgttaggtgctctaacagatgactgtcaactatctgat
ccagttggaattcaaatggctcggcttcccttggaccctatttattctaaagctcttatt
ttagctagtcagtttaactgcttggaggagatgttgataaccgttgcaatgctttctgtg
gaatccatattttatgctccccgtgataagttagaagaggcaagaactgcaatgaaatgc
ttctcaagtccagaaggagaccaccttactttgattaatgtgtaccgggcatctaatgag
ttcctagaaaagagattgatgggaatgggtaatgccaaaagtgaaaaggctctgagaaag
tggtgtaaagaaaactttatcaatagccgttctcttaagcatgctcttgacattcacaag
caaatttctgtgaatgttgaacaaatgggtttgcatgttgcttcttgtggagatgataca
cttcaataccgcaggtgccttgctgcttcctttttcctgaatgcagctgtaaagcagcca
gagggaacatacagggccctcgcaagtggtcaggtggtgcagatccacccttcttcagta
ttatttcaacaaaagccagagtgcataatatttaatgaactggtccaaacaaataacaag
tatatacggaatgtaaccagaatcgactacctatggttgactgagctggctcctcaatat
tatgctgtgcagagttaa
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