Prosopis cineraria: 129315674
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Entry
129315674 CDS
T09047
Name
(RefSeq) probable NOT transcription complex subunit VIP2 isoform X1
KO
K12605
CCR4-NOT transcription complex subunit 2
Organism
pcin
Prosopis cineraria
Pathway
pcin03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcin00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
129315674
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcin03019
]
129315674
Messenger RNA biogenesis [BR:
pcin03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
129315674
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
129315674
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
129315674
NCBI-ProteinID:
XP_054815538
LinkDB
All DBs
Position
Unknown
AA seq
664 aa
AA seq
DB search
MSGLLNSSLNGSASNLPDGAGRSFATSFSGQSGAVSPVFHHTGPIQGLHNIHGSFNVPNM
PGTLASRNSTINSVPSGGVQQPAGNLSSGRFGSSNVPVALSQLSHGSSHGHSGVTNRGGI
SVVGNPGFSSSTNGVGGSIPGILSTSAPIGNRNAVPGLGVSPILGNAGARTASSMGNMVG
GGNIGRSISSAGGLSVPGLASRLNLSVNSGSGGLNVQGQNRLMSGVLPQGSPQVISMLGN
SYPSGGGPLSQSHVQAVNNLNSLGMLNDVNSNDGSPFDINDFPQLTSRPSSAGGPQGQLG
SLRKQGLGVSPIVQQNQEFSIQNEDFPALPGFKGGNADYAMDMHQKEQLHDNSVSMMQSQ
HFSMGRSAGFSLGGSYSSHRPQQQQAPSVSSGGASFSSVNNQDLLHLHGSEIFPPAHSAY
HSQTSGPPGIGLRPLNSPNSVSGMGSYDQLIQQYQQHQNQPQFRLPQMTAVNQSFRDQGM
KSMQASQSTRDPFGLLGLLSVIRMSDPDLTSLALGIDLTTLGLNLNSSENLHKTFGSPWS
DEPAKGDPEFTVPQCYYAKQPPALHQSYFSKFTVETLFYIFYSMPKDEAQLYAANELYNR
GWFYHKEHRLWFVRVPNMEPLVKTNTYERGSYHCFDPNTFETLRKDTFVLYYEMLEKRPL
LPQH
NT seq
1995 nt
NT seq
+upstream
nt +downstream
nt
atgtcaggcctactaaattcttccttgaacggatctgcttcaaatcttcctgatggtgct
ggaaggtcttttgctacatcattctctggtcagtctggtgcagtgtcccctgtatttcat
cacaccgggcctattcaagggttgcataatattcatgggagctttaatgttcccaacatg
ccaggcacacttgcatcaagaaactcgacaataaatagtgttccatctggcggggttcaa
caacctgcaggaaacctttctagcggaagatttgggtccagtaatgttcctgtagcccta
tctcagctatctcacggaagctcccatggacattcaggagtcaccaatagaggaggtata
agtgttgtaggaaatcctggatttagtagtagcacaaatggagttggaggttctattcct
gggatcctttcaacatctgctccaattggtaaccgaaatgctgttccaggattgggagta
tccccaattttgggaaatgcaggtgctcgaactgcaagttcaatgggaaacatggttggt
ggggggaacattggtaggagcataagctctgctggagggctgtctgtacctggacttgct
tctcgactaaatttaagtgtgaacagtggctctggtggtttaaacgtgcaaggacaaaac
agattgatgagtggtgtccttcctcaaggatcaccacaggtaatttctatgttaggaaat
tcttatcccagtggtggaggtccactttctcagagccatgttcaagcagtaaataacttg
aactccttagggatgttgaatgatgttaattccaatgacgggtccccttttgacatcaat
gacttccctcaattgactagccgtccgagttctgctggagggcctcaaggacaattgggt
tccttacggaagcagggtcttggtgtaagtcctattgtccaacaaaaccaagaattcagc
attcaaaatgaagattttccagctttgcctggattcaaaggtggtaatgcggattatgct
atggatatgcaccagaaagaacaacttcatgacaattctgtgtcaatgatgcaatctcag
catttctctatggggaggtctgctggtttcagcttggggggatcatattcttcacatcgt
ccgcagcagcagcaagctccttcagtcagtagcggaggtgcctccttctcatctgtaaac
aatcaggaccttctccatctacatggatcagaaatatttccaccagcgcattcagcctat
cattcacagactagcggacctcctggcattggcttaaggcccttaaattctccaaattca
gtttctggtatgggatcatatgaccagcttatccagcagtatcaacagcaccagaaccag
cctcagttccgccttccacaaatgacagcagtgaatcagtcctttagggatcaggggatg
aaatccatgcaggcttcacaatctactcgagatccatttggcttgctaggcttgttaagt
gtcataaggatgagtgatcctgacctaacttctcttgcattaggaattgatcttacaaca
cttggtttaaatttgaattcatcagaaaatcttcacaagacttttgggtctccatggtct
gatgaaccagctaagggcgatccagagttcactgtgccacaatgttactatgctaaacag
ccacctgccctgcatcaaagttatttttctaagtttacagtggaaacattgttctacata
ttttacagcatgcccaaagatgaggctcaactatatgccgcaaatgagctttacaacaga
ggctggttttatcacaaagagcatcgtttgtggtttgtaagagttcctaatatggagccg
ctagtgaaaacaaacacgtatgagagaggatcgtatcactgttttgatccaaacacattt
gaaacactccgcaaggatacttttgttctttattatgaaatgttggagaagagaccgctg
ctgccgcaacattga
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