Prosopis cineraria: 129315993
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Entry
129315993 CDS
T09047
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 24
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
pcin
Prosopis cineraria
Pathway
pcin03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pcin00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
129315993
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pcin03041
]
129315993
Enzymes [BR:
pcin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
129315993
Spliceosome [BR:
pcin03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
129315993
Complex B
129315993
Complex C
U2 SnRNP specific factors
129315993
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
129315993
NCBI-ProteinID:
XP_054816181
LinkDB
All DBs
Position
Unknown
AA seq
768 aa
AA seq
DB search
MSKRKFGFEGFGINRQSTYNFERSQAPQRLYVPPSSRHGHDNYEDTDLDNIEYDDNDAPK
DGNNGNDSNNNDIDPLDAFMEGIHEEMRAAPPPQPKEKAEDRYRDDDEDDPMESFLRAKK
DVGLTLASEALHAGYDSDEEVYAAAKAVDAGMVEYDSDDNPILLDKKKIEPIPALDHSSI
EYEPFNKDFYEEKPSISGMSEQDVSEYRKSLAIRISGFDVPRPVKTFEDCGFSPQLMNAI
KKQGYEKPTSIQCQALPVVLSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKDEGPI
GVICAPTRELAHQIYLEAKKFAKPYGLRVSAVYGGMSKLDQFKELKAGCEIVVATPGRLI
DMLKMKALTMMRATCLVLDEADRMFDLGFEPQVRSIVGQIRPDRQTLLFSATMPRKVEKL
AREILSDPVRVTVGEVGMANEDITQVVQVISSDTEKLPWLLEKLSGMIDEGDVLIFASKK
AAVDEIESQLAQRGFKAAALHGDKDQASRMDILQKFKSGVYHVLIATDVAARGLDIKSIK
SVVNFDIAKDMDMHVHRIGRTGRAGDKDGVAYTLITQKEARFAGELVNSLIAAGQNVSME
LMDLAMKDGRFRSKRDARKGGGRKGKGRGGGGGRGVRGVDYGLGIGYTPESNNPSPSTTS
RSAAVNSLRTGMMAQFRSNFVAASSNSQNECFSNSTSMPANKRPALPGFISGGSIGGGAN
ANHQTPASSRPAAPAVNASIHNSGADAGQRNTDSSRPRERRRPSGWDR
NT seq
2307 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaagcggaagttcgggttcgaaggctttggcatcaaccgccaatcgacctataat
tttgagagatctcaagctcctcagcgactgtatgttcctccttcatcacgtcacgggcat
gacaattacgaggatactgaccttgacaacatcgaatatgacgataatgatgctcccaaa
gacggaaacaatggtaatgacagcaacaacaacgatattgatcccttggatgcttttatg
gaagggattcacgaggaaatgagagccgcgccgcctccacagccgaaggaaaaggcagag
gacaggtatagagatgatgatgaggacgacccgatggagagtttcttgagggcgaagaag
gacgtagggttgaccctggcgtccgaggctctgcacgctggatatgactccgatgaggag
gtttatgcagctgcgaaagctgtagacgcgggaatggtagagtatgactctgatgacaac
cccattcttcttgacaagaagaaaattgagcccattcctgctctggatcacagttcgatt
gagtacgagccctttaacaaggatttttacgaggagaaaccttcaatatcaggtatgagc
gagcaagatgtttctgaatacaggaagagtttggccattcgtatatcaggttttgatgtt
ccgaggccagttaagacatttgaagactgtggtttctctccacaacttatgaatgccata
aagaagcaaggctatgagaagccaacatcaatacaatgccaagctttaccagttgtgctt
tctggccgggatataattggtatagcaaaaactggttctggtaaaactgctgcctttgtc
cttcctatgattgtacatatcatggaccaacctgaacttcagaaggatgaaggtccaata
ggagtaatctgtgctcccactagagaactggcgcatcagatatatttggaggccaagaaa
tttgcgaaaccctatgggttacgcgtctctgctgtctatggtggaatgtcaaaacttgat
cagttcaaagaactcaaggcaggctgtgagatagttgttgctacccctggcagattgata
gacatgctgaaaatgaaggcacttacgatgatgagagcaacttgcttggtgcttgatgag
gctgatcggatgtttgaccttggatttgagccacaagtaaggtccatcgttggtcagatc
aggcctgatcgccaaactttacttttctctgcgacaatgccccgtaaagttgagaagttg
gccagggaaattcttagtgatcctgttagagtgacagttggggaggttggaatggcaaat
gaagacattactcaagttgttcaagtgatttcttctgatacagagaaattgccatggctt
cttgagaagctgtctggaatgattgatgaaggtgatgtcttaatatttgcttccaaaaag
gctgctgtggatgaaattgaatcacaactggcacaaagaggctttaaagcggcagctctg
catggtgataaagatcaagcttctcgaatggatatcttacagaagtttaaatctggtgta
taccatgttcttattgcaactgatgttgctgctcgtggtcttgacatcaaatcaattaaa
tctgtggtaaactttgatattgcaaaagatatggatatgcatgtacatcgcattggtaga
acaggtcgtgctggtgacaaggatggggttgcatacactcttataactcagaaagaagca
cgttttgctggtgagctggttaatagcttaatagcagctggtcagaatgtgtccatggag
ttgatggatcttgctatgaaggatgggagattcaggtccaaacgtgatgcaagaaaagga
ggtgggagaaaaggtaaggggaggggagggggcggtggtagaggcgtgcgtggagtggat
tatggcttgggtattggatacactccggagtccaataacccttcgcctagcacaacaagt
cgatctgccgctgtaaactcactgcggacagggatgatggcacaatttaggagcaacttt
gttgctgcttcatcaaactctcaaaacgaatgcttcagtaacagtacaagtatgcctgct
aataagagacccgccctccctggcttcatatctggtgggtcaattggtggcggtgcaaat
gctaatcatcagactcctgcttcatccagacctgctgctccggctgtaaatgccagcatt
cacaactctggagctgacgctggccagaggaataccgacagctccaggcctagagaaagg
aggaggccttcaggttgggacagatag
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