Prosopis cineraria: 129316057
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Entry
129316057 CDS
T09047
Name
(RefSeq) LOW QUALITY PROTEIN: tetratricopeptide repeat protein SKI3
KO
K12600
superkiller protein 3
Organism
pcin
Prosopis cineraria
Pathway
pcin03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcin00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
129316057
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcin03019
]
129316057
Messenger RNA biogenesis [BR:
pcin03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
129316057
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_2
TPR_1
TPR_11
TPR_16
TPR_8
TPR_12
TPR_14
TPR_7
TPR_19
TPR_9
TPR_15
ARM_TT21_C
TPR_10
TPR_NPHP3
BTAD
Motif
Other DBs
NCBI-GeneID:
129316057
NCBI-ProteinID:
XP_054816279
LinkDB
All DBs
Position
Unknown
AA seq
1257 aa
AA seq
DB search
MAGTNSPSSTVSRDESSSSSKLEPSESIAENLPCRVLQSSAIRAARSPRHNSSTHFRPFQ
LVDTSMDSQTCRRGEVADHDKEEALFRRLRESLDAHPDDASLHLEMGVFLWEKGEAKETK
ENAAEHFLISAKLNPENGDAFKFLGHYYRCVSGNAQRALKCYQRAVTLNPDDSDSGEALC
NLLDEGGRENLEVAICREASEKSPKAFWAFRRLGYLQVYQKKWIEAVQSLQYALRGYPTC
ADLWEALGLAYQRLGRFTAAVKSYGRALELDNARVFALVESGNIFLTLGTFEKGVDHFRQ
ALAISLHCVSAHYGIAFGLLGFAKNCINRGAYRWGASILKEASQFARTCTYIVKNISCIW
TLLADIQLAYAKCFPWIDEIQELESDEAFKASILSWRKACSFAARDARVSYQRALHLAPW
QANIYVDIAVTSDLIISLDNDHKQDTNAWQLSEKMSVGALLLESDNYEFWVALGYVSDHN
ALKQHALIRGLQLNVSLAISWGYLGKLYRKKGEKLLARQVFDRARSIDPGLALPWASMSA
ECHTRELALAEAFESCLRAVQIMPLAEFQIGLTKLALRTGHLSSSQVFGAIQQAVQRSPQ
YPESHNLNGLVFEARKDYQSAATSYRLARHAMNTGSCNVPNSQIRDVSINLARVLSKAGN
TVDALEECEHLKKEGALDSEGLQVYAFSLWQLGEDNMALSVARSLAASLSSMEKTFVATS
ICFICRLLYSLRGLDAVTTMIVKMPKELFQSAKVSFVLSAIHALDGHNDYLGSVVSSSRS
FLTSHEEIAKMHFLVVLGKLVKNGSECYLGVQSGVLHLRKALHMFPNSNLLRNLLGFLLV
SCKEINNCHIAIRCCKSDPPDLPNQEGFKLASDIQGAGAISCYTIGNNNSKLXFPTCAKQ
YHTNLKSIRYQQKCFHQKPWNHNARYLLVLNYLQRAREERFPYHLCVIINRLVFVALSNE
LYCKAEVSYQYQQFQLLLCASEISLRCGDQVTCITHAKKAAEIVLPDDYLFFAHLLLCRA
HAMKSDFLNLQKEYTRCLDLRTDCHIGWICLKLVESRYQLQIDSNAIDLNFEHSIRKGGS
IGKMWMAVYNLVRGLISLQNGDLLSAEELLAQACLLVDSETCPYLCHGAICMELGRQCYG
SSFLSRAAKSLAKVHEHSMIPLPLARLLLAQAEGSLGFKENWIRNLGFEWHSWPPELRPA
ELFFQMHLLARQSKVGFNTQSSGRSFYSLQRWVLQAIHINPSCMRYWRVLLKLTGFE
NT seq
3774 nt
NT seq
+upstream
nt +downstream
nt
atggcggggacgaactcgccgtcctctacagtttctagagatgaatcttcatcatcctca
aaactagaaccgtctgaatcgattgcagagaatcttccatgtagggtccttcagtcctct
gcgattcgtgctgctcgttctccgagacacaactcttccacccatttccgtcccttccag
ttggtggacacctctatggattcccaaacttgcagaaggggagaagtggcagatcatgat
aaagaggaggccctctttaggcgcttgcgggagtccttagatgctcatccagatgatgct
tcgctccatcttgaaatgggcgtatttttgtgggagaaaggagaagctaaggaaaccaag
gaaaatgctgctgaacattttctgatatcggccaagttgaaccctgagaatggtgacgct
ttcaaatttcttggccattattatcgctgcgtttccggcaatgctcagagagccctgaag
tgttatcagagagctgttacgctcaatcccgatgattctgactctggggaagctttatgc
aatttgcttgacgaaggaggaagagagaatttggaggtggcaatatgccgcgaagcttct
gaaaagtcacccaaggctttctgggctttccgcagactaggctacttgcaggtctatcaa
aagaaatggatcgaggctgtacagagtctgcagtatgccctacgaggctatcctacatgt
gctgatttgtgggaagctttgggtcttgcttatcaacgactaggcaggtttactgcagct
gttaagtcttacggccgtgccctagaattggataacgctcgagtcttcgctttggttgaa
agtggaaatatctttttgacacttggcacatttgaaaagggagttgatcactttcgacaa
gctttggcgatctcgctccattgtgtctctgcacactatggaattgcttttgggttgctt
ggttttgctaaaaactgcattaatcggggcgcttatcggtggggagcttcaatattaaag
gaggcatctcagtttgctaggacatgtacatatattgttaaaaatatctcatgtatttgg
acgttgcttgctgatattcagcttgcatatgcaaaatgttttccttggatcgatgagatt
caagagttggaatctgatgaggctttcaaggcttccatcttgtcatggaggaaggcctgc
tcttttgctgcaagagatgctagagtttcgtatcaaagggccttgcatttggctccatgg
caagctaacatctatgttgacattgcagtaacttcagatcttattatctcattggataat
gatcacaaacaagacacaaatgcatggcagctatcagagaagatgtctgtgggggccctg
ctgctggaaagtgacaattatgagttctgggtggcattgggatatgtgtctgatcataat
gccctaaagcaacatgctttaattagaggattacagttgaatgtgtctctagctatttct
tggggatatcttgggaagctttatagaaaaaagggtgaaaagctattggcaaggcaagta
tttgatcgtgctagaagtattgatcctgggcttgcattgccctgggcaagcatgtcagct
gagtgtcacacgagggagcttgcactagctgaggcatttgagagctgtttgcgggctgta
caaataatgcctttagctgaattccaaatcggcctcactaagctcgccttacgcactggc
catctttcatcttcacaggtcttcggagctattcagcaggctgtgcagcgttcacctcaa
tatcctgaatcccataatttaaatgggctggtatttgaggctcgaaaagattatcagtct
gctgctacttcttatagattagcacgccatgcaatgaacactggctcatgtaatgttcca
aactcacagatcagggatgtatcaatcaatttggcaagggtactttctaaggcagggaat
acagttgatgctttggaagaatgcgaacatttgaagaaagaaggggcgcttgattcagaa
ggtttgcaagtatatgctttttctctgtggcaacttggtgaagataatatggccctttct
gtagctcgaagtcttgctgcaagtctttcttctatggagaagacatttgtggcaacatcc
atttgtttcatctgtagattattatactccctacgtgggttggatgcagtgaccactatg
attgtgaaaatgcccaaagagttatttcaaagtgccaaagtgagttttgtactgtcagct
attcatgctcttgatgggcacaatgactatcttggatctgttgtctcaagtagtcgatct
tttctcacttctcatgaagaaattgccaagatgcactttttagttgtgcttggtaaactg
gtgaaaaatgggtctgaatgctaccttggagttcagagtggagttctgcaccttaggaaa
gctttgcacatgttccctaacagcaatttgctgaggaatctacttggttttctcttggta
tcctgtaaagagataaacaactgtcacatagcaataaggtgttgcaaatcagaccctcct
gaccttccaaatcaagaaggttttaaattagcatcagatattcaaggcgctggagcaatt
tcttgctacaccattggaaacaataattcaaagcttnactttccaacttgtgcaaagcag
tatcatactaatctgaaatctatcagataccagcagaaatgctttcatcaaaaaccatgg
aatcacaatgctcgatacttgcttgttcttaactatcttcagagggcacgcgaagagaga
tttccttatcatctttgtgttataattaatcgtctagtttttgtggctctttctaatgaa
ttatattgtaaggcagaagtgtcttaccaatatcaacagttccaacttcttctctgtgct
tctgagattagtttacgttgtggggaccaagttacttgtatcacccatgctaaaaaggct
gctgaaattgtacttcctgatgattatttattttttgcacacctactgttgtgtcgtgct
catgctatgaaaagtgattttctaaatctacagaaagagtatacaaggtgcttggacctt
agaacagattgtcatattggctggatttgtctcaaactagtggaatctcgatatcagctc
caaattgattcaaatgctatagacttgaactttgagcacagtattagaaagggtggcagt
atagggaaaatgtggatggctgtatataacctggtgagaggcttaatttccttgcagaat
ggggatttactctcagcagaagagctcttggcacaggcttgtttattggtggattccgaa
acctgcccctatttatgtcatggagctatctgtatggagcttggcaggcagtgctatggc
tcttcgtttttatcccgggctgcaaagagccttgccaaagttcatgaacattcaatgatt
cccttacctcttgctagactattgctggctcaagcagaaggtagccttggttttaaagag
aattggatcagaaaccttggctttgaatggcattcgtggcccccagaactgagacctgct
gagctcttctttcaaatgcatctgcttgcaagacagtcgaaagttggttttaacacccag
tccagcggaaggtccttctacagtcttcaaagatgggttcttcaagcaattcacataaac
ccttcctgtatgagatattggagagttttactgaagctcacaggattcgagtaa
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