Prosopis cineraria: 129316691
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Entry
129316691 CDS
T09047
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
pcin
Prosopis cineraria
Pathway
pcin03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcin00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
129316691
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcin03019
]
129316691
03012 Translation factors [BR:
pcin03012
]
129316691
Enzymes [BR:
pcin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
129316691
Messenger RNA biogenesis [BR:
pcin03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
129316691
Translation factors [BR:
pcin03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
129316691
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
dsrm
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
AAA_22
Dicer_dimer
nSTAND3
ATPase
T2SSE
AAA_16
AAA_19
PhoH
Myosin_head
Motif
Other DBs
NCBI-GeneID:
129316691
NCBI-ProteinID:
XP_054817070
LinkDB
All DBs
Position
Unknown
AA seq
1299 aa
AA seq
DB search
MLYSATFQGFIRTTASASTAMALRGPLFLLPHRARRLSLLSFSLRIPALSLRHFHVAQKI
RSPIGALGSVAPSRTTEVDWKESQGVGFRRRSIALPFWHQQSSSYGRFAYQDVSSDDPDM
ELGSPQQQMGGSSLDNIDEWRWKLTMLLRNKDEREVISREKKDRRDFEHLSALATRMGLY
SQQYAKVVVFSKEPLPNYRPDLDDKRPQREVVIPFRVHKEADSLLNAYVSKKSTSFGGFF
DASLHRSSSAGIPADEGILKEPEPLAQNSVVREKIFLRKSLQLRNQQEDWQESPEGQKML
GFRRTLPAFKAKDELLKAISENQVVVVSGETGCGKTTQLPQYILESEIEAARGAACSIIC
TQPRRISAMSVSERVAAERGEKLGESVGYKVRLEGMKGRDTRLLFCTTGVLLRRLLVDRN
LKGVTHVVVDEIHERGMNEDFLLVVLKDLLPRRPDLRLILMSATLNAELFSSYFGGAPTL
HIPGFTYPVQAHFLEDILEMTQYRLTPYNQIDDYGQEKTWKMQKQVQALKKRKTQIASVV
EDALEAADFKEYSLRTQESLSYWSPDSIGFNLIEHVLCHIVKNEKPGAILVFMTGWDDIN
CLKDQLQAHPLLGDPSKVLLLACHGSMASSEQRLIFENPEGGVRKIVLATNMAETSITIN
DVVFVIDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQPGECYHLYPRCVYD
TFADYQLPELLRTPLQSLCLQIKSLNLGSISEFLSRALQPPEPLSVQNAVEYLKTIGALD
EDENLTVLGRNLSMLPVEPKLGKMLILGAIFNCLDPIMTVAAGLSVRDPFMTPFDKKDLA
ESAKAQFAAGAYSDHLALVRAYEGWSNAEAQKEGYEYCWRNFLSSQTLRAIDSLRKQFFY
LLKDIGLVDHNTDYCNAWSHDEHLVRAVISAGLFPGVCSVVNKEKSIALKTMEDGQVLLY
ANSVNGAVPKIPFPWLVFNEKVKVNSVFIRDSTGISDSMLLLFGGNVSRGGLDGHLKMLG
GYLEFFMNPALAETYLSLKKELEELIHRKLLDPKLDIQSCDGLLSAVRLLVSEDQCSGKF
VFGSRVLSPSNKAKDSKSVSIECSNYKNQLQTLLARARHEPPTYKTKQLENNRFCSTVIF
NGLNFVGQPCSSKKQAEQDAASEALLWLKGNTHSSSDDIDQLQSLLGRDRHKPSNKAKCS
KSSSIESGDCKDQLQTLLVRAGHEPPTYKTKQLGNQFRSTVIFNGLNFVGHPCNSRKQAE
KDAAAEALLWLKGDPHSNHNDDDRMALPFKKGNKRSKFF
NT seq
3900 nt
NT seq
+upstream
nt +downstream
nt
atgctttactccgccacttttcagggctttatcagaaccaccgcttctgcttcaacggcc
atggccctcaggggtccccttttcctcttaccccacagagctcgaaggctctcccttctc
tccttttccttgagaattcctgcacttagcttgagacattttcatgtggcccaaaagata
aggtctccaataggggctttaggctccgttgcgccttccaggacgactgaggtggattgg
aaggagagtcaaggtgtgggctttaggcggaggagcattgctttgccgttttggcatcag
cagagctccagctatggtcgttttgcttaccaggatgtgtctagtgatgatcctgatatg
gagttggggtctcctcagcaacaaatgggcggctcatcccttgataacattgatgagtgg
agatggaagctgaccatgcttcttcgcaacaaggatgagcgagaagtgatttcaagggag
aaaaaggatagacgtgattttgagcatctctcagctttagcaactaggatgggtttatat
agccaacaatatgcaaaagtagttgtctttagcaaggaacctctgccaaattacagacct
gatctggatgataagcgtccacagagggaggttgtcataccttttcgtgtccataaagaa
gcagattctcttctcaatgcttatgtttctaaaaagtctacaagctttggaggctttttt
gatgcatccttgcatagatcaagcagtgctggcattcctgcagatgaaggaattctcaag
gagccagagcccttggcacagaatagtgttgtcagggagaaaatctttctacgaaaaagt
ttgcaactgcgtaatcaacaagaagattggcaggagtctcctgaaggacaaaagatgctt
ggatttcgtagaactcttcctgcattcaaagcaaaggatgaattattgaaagccatttca
gagaaccaggttgttgtggtctcaggtgaaactggttgtggtaagaccacacaacttcca
caatatatattagagtctgagattgaagctgcacgtggtgctgcctgtagcataatttgt
actcagcctagaagaatatctgcaatgtctgtttctgaaagagttgcagcagagcgtggg
gaaaaattgggagaatctgttggttacaaggttcggctggagggtatgaaaggaagggat
actcgtcttcttttttgcactacaggtgtattgttgaggagactgcttgtggaccgaaat
ctaaaaggtgtgactcatgttgttgttgatgagattcatgagcgtggaatgaatgaagat
tttctccttgttgtgctgaaggatcttctcccacgccgtccagaccttaggttaattttg
atgagtgcaaccttaaacgccgagcttttttcttcctactttggtggggctccaacttta
catatacctggttttacgtatccagttcaagcacattttcttgaggatattctggagatg
actcaatatcggttgacaccttataatcaaattgatgattatggtcaagagaagacatgg
aaaatgcagaaacaggttcaagctttgaaaaaaaggaagacacagattgcttctgtcgtt
gaggatgcacttgaagctgctgatttcaaggaatacagcttacgcacccaggagtcacta
tcctattggagtcctgattcaattggttttaaccttattgaacatgttctttgccacatt
gtcaagaatgaaaagccaggtgctattttggtttttatgactggttgggatgacataaat
tgtttgaaggatcagctccaagctcatcctcttttgggtgacccaagcaaagtattgctt
cttgcatgccacggctccatggccagctctgagcagaggttgatatttgaaaatcctgaa
ggaggagtgaggaaaatagttcttgccaccaatatggctgagactagtattaccataaat
gatgttgtctttgtgattgattgtgggaaagcaaaagagacatcttatgatgcactaaac
aatactccttgtttacttccatcttggatctcaaaggctgctgctcggcagagaagagga
agggcaggtcgtgttcaaccaggcgaatgttaccatctttatccgagatgcgtttatgat
acttttgctgattatcaattgccagagcttttaagaacacctttacagtccctatgtctt
caaatcaaaagtctaaaccttggaagcatttcagaattcctatccagagctctgcaacca
ccagaacctctgtcggttcaaaacgctgttgaatatttgaagactattggggccttggac
gaagatgaaaatctgacagttttaggtcgtaacttgtcaatgctccctgtagagcctaaa
cttggcaagatgcttatcttaggagctatcttcaactgtttagatcccataatgactgtt
gctgctggtcttagtgtaagggatccatttatgacgccatttgacaagaaggaccttgca
gagtctgccaaggcccagtttgctgctggtgcctatagtgatcatcttgcacttgttcgg
gcttatgagggttggagcaatgcagaagcacagaaagaaggttatgagtactgttggaga
aatttcctttcttcacaaacacttagagctattgactctcttcgaaagcaatttttttac
ttgctcaaagatataggtttggttgatcataatactgactattgcaatgcatggagtcat
gatgagcatctggtccgagcggtaatttcagctggtttgtttcctggagtatgctctgtt
gtgaacaaagagaagtcaatagcattgaaaacaatggaggacggtcaagttcttctgtat
gcaaactctgtaaatggcgctgtacccaaaattcctttcccgtggctggtattcaatgaa
aaggtgaaggtgaattcagtattcatccgggattcaaccggtatatctgattcaatgctg
ctcttatttggtgggaatgtttccagaggtggactggatggtcacctgaaaatgctgggg
gggtatttggaatttttcatgaatcctgcattagctgagacttacttgagcctgaagaag
gagctggaggaattaatacatagaaaacttctggatcccaagttggatatacaatcatgt
gatgggcttctttcagctgtcagattgctggtatcggaggaccagtgtagtggaaaattc
gtctttggtagtcgggtgctatcaccatcaaataaggcaaaagattcgaaaagtgtttct
atcgagtgcagtaactataaaaaccagctgcaaacgttgcttgccagggctagacatgaa
ccaccaacttacaaaacaaaacaacttgaaaacaaccggttctgctctactgtcatattc
aatggcttgaattttgttggccagccttgcagcagcaagaagcaagcagagcaggacgct
gcttcggaggctcttctgtggttaaaagggaatacacattcatctagcgatgatattgac
cagcttcaatcattgcttggcagggatcggcataaaccatcaaataaggcaaaatgctcc
aaaagcagttctattgagagcggtgattgtaaagaccagctgcaaacattgcttgtcagg
gctggacatgaaccaccaacttacaaaacaaaacaactgggaaatcagttccgctctact
gtcatattcaatggcttgaattttgttggtcacccttgcaacagcaggaaacaagcagaa
aaggatgctgctgctgaggctcttttatggttaaagggtgatccgcattctaatcataat
gatgatgatcgtatggctttgcctttcaaaaagggaaataaaagaagcaaatttttctga
DBGET
integrated database retrieval system
