KEGG   Prosopis cineraria: 129317724
Entry
129317724         CDS       T09047                                 
Name
(RefSeq) THO complex subunit 3 isoform X1
  KO
K12880  THO complex subunit 3
Organism
pcin  Prosopis cineraria
Pathway
pcin03013  Nucleocytoplasmic transport
pcin03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pcin00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    129317724
  09122 Translation
   03013 Nucleocytoplasmic transport
    129317724
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pcin03019]
    129317724
   03041 Spliceosome [BR:pcin03041]
    129317724
Messenger RNA biogenesis [BR:pcin03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     129317724
Spliceosome [BR:pcin03041]
 Complex C
  Other components
   EJC/TREX
    129317724
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    129317724
SSDB
Motif
Pfam: WD40_CDC20-Fz WD40_Prp19 WD40 WD40_WDHD1_1st Beta-prop_EML_2 ANAPC4_WD40 EIF3I Beta-prop_CAF1B_HIR1 WDR55 Beta-prop_TEP1_2nd Beta-prop_WDR19_1st Beta-prop_IFT122_1st Beta-prop_RIG_2nd Beta-prop_TEP1_C Beta-prop_Vps41 WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd eIF2A Beta-prop_WDR75_1st Beta-prop_EIPR1 Beta-prop_EML WD40_RFWD3 Beta-prop_WDR35_TULP_N WD40_MABP1-WDR62_1st Beta-prop_HPS5 Beta-prop_IFT140_1st Beta-prop_DCAF12 Beta-prop_IFT80_2nd WDR90_beta-prop_4th B-prop_COPA_B_2nd DUF7099 Beta-prop_Nup120_160 WD_LRWD1 Beta-prop_WDR11_1st CNH
Other DBs
NCBI-GeneID: 129317724
NCBI-ProteinID: XP_054818067
LinkDB
Position
Unknown
AA seq 313 aa
MEEKLPFKNLHSREYSGHKKKVHSVAWNCIGTKLASGSVDQTARIWYIEPHGHGKVKDIE
LKGHTDSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGT
HVAVGNRDDELTILDVRKFKPIHRRKFNYEVNEIAWNMTGEMFFLTTGNGTVEVLAYPSL
QPMDTLMAHTAGCYCIAIDPVGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISF
NHTGEYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQA
DEGVFRIFGFDSA
NT seq 942 nt   +upstreamnt  +downstreamnt
atggaagaaaagcttccatttaagaatctccatagcagagagtactcgggccacaagaag
aaggtgcactcagtggcctggaattgcattggcacaaaacttgcttctggttctgtggac
caaactgctcgaatatggtatattgagccacacggacatggtaaggtcaaagatattgaa
ttgaagggtcacactgatagtgtggatcagctatgttgggaccccaaacatgctgatctg
attgcaactgcatcaggagacaagactgttcgtttgtgggatgctcgtagtggaaagtgc
tcacaacaggcagaacttagtggggagaatattaatatcacctacaaacctgatgggact
catgtagctgtaggtaacagggatgatgagttgacaatactggatgtacggaagtttaaa
ccaattcataggcgcaagttcaattatgaggtaaatgagattgcttggaatatgacagga
gagatgttctttctaaccacaggaaatgggactgttgaagtactggcttacccatctctg
cagcctatggataccctcatggcccatacagctggttgttattgcattgctatcgatcca
gtaggaagatattttgccgttggaagtgcagattccctagttagcctctgggatatctct
gagatgctctgtgtgcgtaccttcaccaagctcgagtggcctgtgaggacaattagtttc
aatcatactggtgaatatattgcttctgccagtgaagacttgttcattgatatatcgaac
gtgcatacgggacgaacagtgcatcagattccatgtagggcggctatgaacagcgtggaa
tggaatccgaagtacaatttgcttgcatatgctggtgatgacaaaaacaagtatcaagct
gatgaaggtgttttccgaatttttggctttgacagtgcctag

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