Prosopis cineraria: 129318243
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Entry
129318243 CDS
T09047
Name
(RefSeq) ATP-dependent RNA helicase DBP2-like isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
pcin
Prosopis cineraria
Pathway
pcin03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pcin00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
129318243
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pcin03041
]
129318243
03009 Ribosome biogenesis [BR:
pcin03009
]
129318243
Enzymes [BR:
pcin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
129318243
Spliceosome [BR:
pcin03041
]
Complex A
U1 snRNP components
U1 related factors
129318243
Complex B
129318243
Ribosome biogenesis [BR:
pcin03009
]
Eukaryotic type
Pre-60S particles
Helicases
129318243
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
PRAI
Motif
Other DBs
NCBI-GeneID:
129318243
NCBI-ProteinID:
XP_054818878
LinkDB
All DBs
Position
Unknown
AA seq
564 aa
AA seq
DB search
MSYVPPHLRSSSSTSVATRSSSLAQDTNDHKKLAFSSNSHFHASLTPSSSSSFSNSSRRS
SGAPPLNRTLSVPDPVFPHWQPSERVSRMKPEQIEEVRLRLNLDVSVASESLPAPAPIES
FSDMCLHPSIMKDIAYHEYTRPTSIQAQAMPIALSGRDLLGCAETGSGKTAAFSIPMIEH
CLAQPPIRRGDGPLALVLAPTRELAQQIEKEVKAFSRSLESLKTAIVVGGTNIEKQRSEL
RAGVDIVVATPGRFIDHLQQGNTSLSRISFVVLDEADRMLDMGFEPQIREVMRNLPEKHQ
TLLFSATMPVEIEALAKEYLASPVQVKVGKVSSPTANVCQTLVKVSEDEKIDRLLDMLVE
EASQAEKCNRPFPLTIVFVERKTRCDEIAEALVAQGLSAVSLHGGRSQNEREAALHDFRS
GSTNILVATDVASRGLDVTGVSHVINLDLPKTMEDYVHRIGRTGRAGSTGQATSFYTDRD
MFLVANIRKAIADAESGNAVAFATGKVARRKEKEAAAAQKEAKIALSKNLSSGTAPIAIE
DKYRFMITSSNIKREGAADSAWDD
NT seq
1695 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtatgttcctcctcacctcaggagctccagctccactagtgttgctaccagaagc
tcgtctctcgcccaagacactaacgatcacaagaagctggccttttcctctaattctcac
ttccacgcctctcttactccttcgtcctcctccagcttctccaattcctctcgccggagc
tccggagctccacctctaaaccgcactctttccgtccccgaccccgtgttccctcactgg
caaccgtctgaacgcgtttctcgtatgaagcccgagcagattgaagaggtccgactgcgg
cttaatcttgatgtttctgttgcttctgagtctcttcctgcacctgcaccaatagaatca
ttttcagacatgtgcttgcaccctagtatcatgaaggatattgcttatcatgaatacaca
aggccaacttctatccaggctcaagccatgccaattgctcttagtggaagggatctattg
ggttgtgcagaaactggtagtggaaaaactgcagctttctccattcctatgatagagcat
tgcttggctcaacctccgattcggcgcggtgatggtcctttagcattggttctggcacct
actagagagcttgctcaacaaatagagaaagaggttaaagcttttagcagatcacttgaa
tcattaaaaactgcaatagttgtaggtggaactaacattgaaaagcagagatctgagcta
cgagcaggagttgacatagtggttgctacccctggaagattcatcgatcatttacaacaa
ggcaatacttccctttctagaatttcttttgttgttctagatgaggcagatcggatgctt
gatatgggttttgaaccgcagataagagaggtcatgagaaatcttccagagaagcatcaa
acattgttgtttagtgcaactatgcctgtggagattgaagctttagcaaaggagtactta
gcaagccccgtgcaggtaaaggtagggaaagtgagtagcccaacagcaaacgtttgtcaa
actcttgtgaaggtttctgaagatgagaagattgaccggcttctggatatgcttgttgag
gaggcgtcacaggctgaaaaatgcaatcgtccttttccattaacaatagtgtttgtggaa
agaaagacaaggtgtgatgaaattgctgaagcattggtagcccaaggtttatctgctgtt
tctcttcatggtggccgtagtcagaatgaaagagaggctgctttgcatgattttcgaagt
ggctccactaacattttggttgccactgatgttgcatcgcgtggcttggatgtcacagga
gtgtcacatgtcatcaatttagatcttccaaagaccatggaagattatgtacaccggatt
ggcaggacagggcgtgcgggatcaacaggccaggcgacttctttttacactgatcgtgat
atgttccttgttgcaaatataaggaaggctatagctgacgctgagtctgggaatgccgtg
gcatttgcaactgggaaagttgctagaagaaaggagaaagaggcggcagctgcacaaaaa
gaggcaaagatagctttatccaagaacttgtcttccggaactgccccaatcgctattgag
gataagtataggttcatgattacctcatcgaatatcaaaagagaaggtgcagctgatagt
gcgtgggatgattga
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