Prosopis cineraria: 129318278
Help
Entry
129318278 CDS
T09047
Name
(RefSeq) uncharacterized protein LOC129318278 isoform X1
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
pcin
Prosopis cineraria
Pathway
pcin03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcin00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
129318278
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pcin03000
]
129318278
03019 Messenger RNA biogenesis [BR:
pcin03019
]
129318278
04121 Ubiquitin system [BR:
pcin04121
]
129318278
Enzymes [BR:
pcin01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
129318278
Transcription factors [BR:
pcin03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
129318278
Messenger RNA biogenesis [BR:
pcin03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
129318278
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
129318278
Ubiquitin system [BR:
pcin04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
129318278
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-RING_4
RRM_1
Baculo_IE-1
zf-RING_2
RING_XB3-XBAT31
Rtf2
Motif
Other DBs
NCBI-GeneID:
129318278
NCBI-ProteinID:
XP_054818979
LinkDB
All DBs
Position
Unknown
AA seq
913 aa
AA seq
DB search
MCDKGVKSCPICTEEMDLTDQQLKPCKCGYEICVWCWHYIMEMAEKNGTEGRCPACRTTY
DKERIVAMAANCQRLVAEMNLKEKKKMQKLKPKASDGRKHLSDVRVIQRNLVYIIGLPLN
LADEDLLQRKEYFGRYGKVLKVSISRTATGVVQHTANNSCCVYITYSKEVDAVRCIQSVH
CFVLDGKSLRACFGTTKYCHAWLRNLACSNRDCLYLHDYGSQEDSFTKDELVLAFARSRI
QQIIGATNNLHRRSGNVLPPPVDDPRHMLPASRSVAKNPLDKMENQVKVSCSSSGTGNNT
ALPSVTSWVMRVSGTLPPHTSTQNSGSSLNRKVEVSNDPQAIVSGVSSAERLTLNTRTSG
GVAFDAHSSALLESLDFNKRDIEGTMQTHQSYVTKAGVVEKLPSDGMSNHGTSLAVTAGD
GLGEVSPASRGFVEFSQSCDLNMDRVFSHNSNHDVKGLCSGLSSLSIHSHVEDTCCTPGS
DNIGFTNNSIGSFGRQHMMEENQYSAEQSTWPALWEEIIVDDLLNLDCEQPKCSKGFNNL
SSGISLPGLPLNLEQSSHQVWQQDKVGHHSQPGKLSDYFDNGTGFDDKVSPDMAESSIIS
NILSLEMDAWEDSFVKLLGESDEQCTSSKAPVSWKVHDKNQSRFSFARQDEFFNEVSDFE
HKFAVVGHAPSKCFSPGGLMENEDALTGKGRHVLPLSSPVDSHVGSQSFLSSTRSVSNAH
SSMPPGFPVSSRIPPGFSCGRVGKNCNTSVSRLQGQYVPPSGHVGRFRDEVSDPATLDFS
EGKLAEKLNNASLDLRQSFLPQFNPDEDDARLKLLMQQSQNLRFSHYVGDRFSPQNDSYI
TPLKLPDQFQPNNPSIYQQLNSQQFNTNMLSSSSLWDGWNDSWNYSGLGMSEVLNDGRLL
HNNFISNYENIKF
NT seq
2742 nt
NT seq
+upstream
nt +downstream
nt
atgtgtgacaagggagtaaaatcctgccccatatgcactgaggagatggacttgactgat
cagcaattaaagccttgcaaatgtggctatgagatctgtgtctggtgttggcattacatt
atggaaatggctgaaaagaatggaactgagggccgatgtcctgcttgtcgtacaacttat
gacaaggaacgaattgtggccatggcagcaaactgtcaaagattggtggctgaaatgaat
ttaaaggaaaaaaagaaaatgcagaagttaaaacccaaagcatcagacggaaggaaacat
cttagtgatgttagagtcattcaacgcaatttagtgtacataattgggttgcctcttaac
cttgcagatgaagatctgcttcagcgtaaggagtattttggcaggtatggaaaggttttg
aaagtgtctatctctcgaacagcaacaggagtagtccaacatacagcaaacaacagctgt
tgtgtgtacataacttactcaaaggaggttgacgctgttcgatgtattcaatcagtacat
tgttttgtgttagatggtaaatcactgagggcttgttttggaaccacaaagtattgccat
gcatggttgagaaatttggcttgcagtaatagagattgtttatatttgcatgattatggc
tctcaagaagatagctttaccaaggacgaactagttttagcatttgctaggagtagaatt
caacaaattattggtgctacaaacaatttgcatcggcgctcgggtaacgtcttacctccc
ccagtcgatgatcctagacatatgttaccagcttccagatcagttgccaaaaatccttta
gacaaaatggagaaccaggttaaggtatcttgctcaagtagtggcactgggaataataca
gcactcccttcagtgacctcgtgggttatgcgagtgtctggcactctgccaccacacaca
agcacacaaaattctggtagttctctgaacagaaaagttgaggtgtccaatgatcctcaa
gccattgtgtctggagtttctagcgctgaaaggttgactcttaacacaagaacatcaggt
ggagttgcatttgatgcacattctagtgctttgttggaatcattagactttaacaagcgt
gatattgagggaaccatgcaaacccatcagtcatatgtgactaaagcaggtgttgtggag
aaacttccttctgatggaatgtctaaccatggaacatctctggcagttacagcaggtgat
ggtctaggtgaggtatctcctgccagcagaggctttgtagagttttcccaatcttgtgat
ctgaacatggacagagtgtttagccataattcaaatcatgatgttaagggattgtgctca
ggattgtcttcacttagcattcatagtcatgttgaagatacatgttgcactcctggttca
gacaatattggttttactaataattctattggttcatttggaaggcagcatatgatggaa
gaaaaccaatattctgctgaacagtccacctggccagctttgtgggaagaaattatagtg
gatgacctactgaacttagattgtgagcaaccaaaatgcagtaaaggcttcaataatcta
tcatctgggatttctttacctggtttgcctctgaatcttgaacaatcgagccatcaagtt
tggcagcaagataaggttggtcaccacagtcaaccgggcaaactttctgactattttgat
aatgggacaggttttgatgataaagtttctccagatatggcagagagcagcattatatca
aatattttgtctttggaaatggatgcatgggaagattcgtttgttaagttgttaggtgaa
agtgatgaacaatgcacatcatcaaaagcaccggtttcatggaaagttcatgacaagaat
cagtcaaggttttcgtttgccagacaggatgagtttttcaatgaggtttctgattttgag
cataaatttgcggttgtagggcatgctcctagtaagtgtttttcaccaggtggtttaatg
gaaaatgaggatgctttgactgggaaaggcagacatgttttgccattaagcagccctgta
gatagccatgttggcagtcagtccttcctttcatctacacgttctgtgtcaaatgctcat
tcttcaatgccgcctggatttccggtgtctagcagaatacctcctggattttcatgtggg
agagtgggaaagaattgtaatacttctgtgagccgattgcaagggcaatatgttcctcca
tctggacatgttggcaggtttagagatgaagttagtgatccggcaacattggattttagt
gaagggaagctagcagaaaagctgaacaatgcatctcttgacctgaggcaatcttttctc
ccacaatttaaccctgatgaagatgatgctaggcttaagttgttaatgcagcagtcacag
aatttgagattctcacactatgttggggacagattttctcctcaaaatgattcatatata
actcctttaaagcttcctgatcaattccaacccaacaatccttcaatttaccagcaactt
aactcccagcagttcaatactaatatgctttcatcaagtagcctgtgggatggttggaat
gattcttggaactatagtggtctgggtatgtcggaggttttgaatgatgggcgactgtta
cataacaacttcatctctaattatgagaatatcaagttttga
DBGET
integrated database retrieval system
