KEGG   Prosopis cineraria: 129318724
Entry
129318724         CDS       T09047                                 
Name
(RefSeq) protein ROOT INITIATION DEFECTIVE 3 isoform X1
  KO
K14829  pre-rRNA-processing protein IPI3
Organism
pcin  Prosopis cineraria
Brite
KEGG Orthology (KO) [BR:pcin00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:pcin03009]
    129318724
Ribosome biogenesis [BR:pcin03009]
 Eukaryotic type
  Pre-60S particles
   5-FMC complex
    129318724
SSDB
Motif
Pfam: WD40 WD40_Prp19 Beta-prop_EML_2 WD40_WDHD1_1st WD40_CDC20-Fz WDR55 EIF3I Beta-prop_TEP1_2nd Beta-prop_EML Beta-prop_CAF1B_HIR1 NBCH_WD40 Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_2nd ANAPC4_WD40 Beta-prop_TEP1_C Beta-prop_DCAF4 WDR90_beta-prop_4th Beta-prop_IP5PC_F Beta-prop_IFT140_1st Beta-prop_HPS5 Beta-prop_RIG_2nd Beta-prop_WDR19_1st Beta-prop_Vps41 Beta-prop_WDR75_1st Beta-prop_IFT122_1st Beta-prop_WDR75_2nd Beta-prop_VPS8 Beta-prop_SPT8 Beta-prop_DCAF12 WDR54 PROPPIN WD40_MABP1-WDR62_1st Beta-prop_SCAP PEP5_VPS11_N Beta-prop_Nup120_160 Nucleoporin_N Beta-prop_WDR19_2nd Beta-prop_NUP159_NUP214 VPS11_N Beta-prop_WDR35_TULP_N
Other DBs
NCBI-GeneID: 129318724
NCBI-ProteinID: XP_054819624
LinkDB
Position
Unknown
AA seq 445 aa
MSWMEVVLAASSVDAGIGCWDLQSGAEQLRYKTCASAPHGLINVGSRFLASSQIRDSSAT
SGLVLYWSWSKPQVEAKSFPAEPIRPLAANHPGTYIAGGGLSGDIYFWEVETGKLLKKWH
AHYRALTCLVFSEDDSLLISGSEDGCIRVWSLFMIFDDFKRQEAGHHYEHSFSEHTLPVT
DIVIGYGACNAIIISAAEDRTCKVWSLSRGTLLRNIVFPSIIDAIALDPAEHVFYAGSRD
GKIFIAGLNTERIFSQNHDMHIIGSFSNHSKAVTCLTYSASENLLISGSEDGTIRVWNAR
THNIVRTFKHAKGPLNNILVVRKQLDSSKPISSTLQSCSRRQGSLLPPPLEKYSNSINED
SDVKTIVSLYDGKRGMDVSYMSSQAIFNQIKEFQNRGSSASEMEMERLKADCRRSAQMVN
RFKKMYEDLQDFYEEDFLKSGQTKT
NT seq 1338 nt   +upstreamnt  +downstreamnt
atgtcttggatggaggttgttttggcggcatcttctgttgatgctggtattggctgctgg
gaccttcagtcaggggctgagcagctgcgctataaaacttgtgcttctgcacctcatggt
ctcattaatgtcggcagtcgcttccttgcatcttcccagattcgagattcctcagccacc
tctggtctggttctctattggtcctggtccaagcctcaagtagaagccaagagctttccg
gctgagccaatcaggccacttgctgctaatcacccgggtacttatatagctggtggtggc
ttatcaggtgacatatacttttgggaggttgaaactggcaaattgcttaagaagtggcat
gctcattatagggctttaacttgcctagtattttctgaggatgactcactgctgatatct
ggttcagaagatggatgcatacgagtttggtccttgttcatgatatttgatgacttcaaa
aggcaggaagcaggtcatcattatgagcatagtttttcagagcacaccttaccagtaact
gacattgtaattggttatggagcatgcaatgcaattataatttctgctgcagaggatagg
acctgcaaggtttggagcttatctagaggaacactattgagaaatatagtattcccttca
ataattgatgcaattgcattggatcctgctgaacatgtcttttatgccggcagtagagat
ggaaaaatatttattgccggtcttaacactgaaaggatctttagtcagaatcatgacatg
catatcatcggttcattctctaatcacagcaaagcagttacttgcttaacatatagtgca
agtgagaatttgttaatctctggatcagaagatggaacgattcgggtttggaatgctaga
actcataatattgtccgcacgttcaaacatgcaaaaggacctttaaataatattcttgtt
gtaagaaaacagctcgactcaagtaagcctatctcttcaactctacaatcatgctcaagg
aggcagggatctctattacctccgccattggaaaaatactcaaattcaataaatgaagat
tcagatgttaagaccattgttagcctctacgacggcaagaggggtatggatgtttcatac
atgtcttctcaagcgatatttaatcaaatcaaggagtttcagaatcggggctcctctgct
tctgaaatggagatggagagactgaaagcggattgcagaaggtctgcccagatggttaac
cgatttaagaaaatgtatgaagatttgcaagatttctacgaagaggacttcttgaaaagt
ggtcaaacaaaaacttga

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