Prosopis cineraria: 129318907
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Entry
129318907 CDS
T09047
Name
(RefSeq) LOW QUALITY PROTEIN: DExH-box ATP-dependent RNA helicase DExH12
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
pcin
Prosopis cineraria
Pathway
pcin03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pcin00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
129318907
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pcin03041
]
129318907
Enzymes [BR:
pcin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
129318907
Spliceosome [BR:
pcin03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
129318907
Complex C
U5 SnRNP specific factors
129318907
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sec63
DEAD
SNRNP200_wHTH
Helicase_PWI
ResIII
Helicase_C
BRR2_plug
AAA_22
AAA_30
T2SSE
AAA_11
ATP-cone
Motif
Other DBs
NCBI-GeneID:
129318907
NCBI-ProteinID:
XP_054819883
LinkDB
All DBs
Position
Unknown
AA seq
2175 aa
AA seq
DB search
MAHLGGGAEAHARFKQYEYRANSSLVLTTDTRPRDTHEPTGEPESLWGKIDPKSFGDRAY
RGRPPELDEKLEKAKKKKKERDPLAEAPPNLQSKRRRLQEESVLTSTEEGVYQPKTKETR
AAYEAMLSVIQQQLGGQPLSIVSGAADEILAVLKNETVKNPDKKKEIEKLLNPIPNQVFD
QLVSIGRLITDFQEGVDAPGSATANGDDSLDDDVGVAVEFEENEEEEEESDLDMVQEEEE
DDDDVVEPNGAGAMQMGGIDDDDMQEANEGLNLNVQDIDAYWLQRKISQAFEQQIDPQQC
QKLAEEVLKILAEGDDREVETKLLVHLQFDKFSLVKFLLRNRLKIVWCTRLARAEDQDER
KKIEEEMTGLGPELASIVEQLHATRATAKERQKNLEKSIREEARRLKDESTGEGDTGRRG
LADRDSESGWLKGQRQLLDLDSLAFEQGGFFMAKKKCDLPDGSYRHLSKGYEEIHVPALK
AKPVDSNEKFIKISAMPDWAQPAFKGMTQLNRVQSKVYETALFNPDNILLCAPTGAGKTN
VAVLTILQQIALHRNSDGSFNHNEYKIVYVAPMKALVAEVVGNLSNRLQDYDVKVRELSG
DQTLTRQQIEETQIIVTTPEKWDIVTRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESI
VARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVDLKKGLFYFDNSYRPVPLSQQYVG
ITVKKPLQRFQLMNDICYEKVMGVAGKHQVLIFVHSRKETAKTARAIRDTALANDTLGRF
LKEDSASREILHTHTDLVKSNDLKDLLPYGFAIHHAGMTRTDRQLVEDLFADGHVQVLVS
TATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDVMQMLGRAGRPQYDSYGEGIIIT
GHSELQYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAREACNWIGYTYLYVRMIR
NPSLYGLAPDILTRDITLEERRADLIHSAATILDKNNLVKYDRKSGYFQVTDLGRIASFY
YITHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPIKES
LEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKA
LNLCKMVNKRIWSVQTPLRQFNGIPNDILMKLEKKDLSWERYYDLSSQEIGELIRAPKMG
RTLHKFIHQFPKLNLAAHVQPITRTVLRVELMITPDFMWEDRIHGYVEPFWVIVEDNDGE
YILHHEYFMLKKQYIDEDHTLNFTVPIYEPLPPQYFIRVVSDRWLGSQTVLPVSFRHLIL
PEKYPPPTELLDLQPLPVSALRNSSYEAIYQDFKHFNPVQTQVFTVLYNSDDNVLVAAPT
GSGKTICAEFAILRNHQKGLDSVMRVVYIAPIEALAKERFRDWEKKFGGGLKLRVVELTG
ETATDLKLLEKGQIIISTPEKWDALSRRWKQRKHIXQVSLFIVDELHLIGGQGGPVLEVI
VSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGI
DIANFEARMQAMTKPTYTAIVQHAKNGKPALVFVPTRKHVRHTAVDLMTYSNADGGEKPF
LLRPPGEIEPFLNRINDEMLKVTLRQGVGYLHEGLSNFDQEVXTQLFEAGWIQVCVMSSS
LCWGVTLSAHLVVVMGTQFYDGRENAQSDYPVTDLLQMMGHASRPLIDNSGKCVILCHAP
RKEYYKKFLYEAFPVESHLHHFLHDNLNAEVVAGIIENKQDAVDYLTWTFMYRRLTQNPN
YYNLQGVSHRHLSDHLSELVENTLSDLEASRCVAIEDDMDLSPSNLGLIASYYYISYTTI
ERFSSSLTSKTRMKGLLEVLSSASEYAQIPIRPGEEDVVRRLINHQRFSFDNPKVTDPHI
KANALLQAHFSRQPVGGNLALDQREVLLSANRLLQAMVDVISSNGWLSLALLAMEVSQMV
TQGLWNTDSMLLQLPHFTKELAKRCLENPGKKIESVFDLVEMEDDERRELLQMSDLQLLD
IARFCNRFPNIDMSYEVLDSDSVRAGEEATVLVTLERDLEGRTEVGPVDAPRYPKAKEEG
WWLAIGDPKNNLLLAIKRVSLQRKVKAKLDFTPSEAGRRSYTLYFMCDSYMGCDQEYTFT
VDVKELLVMRPSDTE
NT seq
6528 nt
NT seq
+upstream
nt +downstream
nt
atggcgcatctgggtggtggtgccgaggcacatgctcgattcaagcaatatgagtatcga
gccaactcgagtctggtcctcaccacagacactcgacctcgggacactcatgagccaacc
ggggagcctgaatcattgtggggtaagattgatcctaaaagctttggtgatagagcttat
agaggcaggccgccggaattagacgagaagctggagaaagcgaagaagaagaagaaagaa
cgtgaccctcttgcagaagctcctcccaatttgcagagcaagagacgccggcttcaagaa
gaaagtgttctgacttccacggaggaaggcgtttatcagccaaagacgaaggaaactaga
gctgcgtatgaggctatgcttagtgtcattcaacaacagctgggtgggcagccactgagt
atagtaagcggtgctgctgacgaaattttggctgtactgaagaacgagactgtaaaaaac
cccgataagaaaaaggagatcgagaagcttttaaaccctatccccaaccaggtatttgat
cagcttgtatccattggtaggcttatcaccgattttcaagagggagttgatgctcccggg
tccgctacagctaatggtgacgattccctagacgatgatgtgggtgttgcggttgagttt
gaggagaatgaggaagaggaagaagagagtgatcttgatatggtgcaagaggaggaagag
gatgatgatgatgtcgtggaaccaaatggtgctggggctatgcaaatgggtggtatcgat
gatgatgatatgcaggaagcaaatgaggggttgaacctcaatgttcaggacattgatgct
tattggcttcaaaggaaaatatcccaagcttttgagcagcagattgatccgcagcaatgc
cagaaacttgcagaagaggtgcttaagatactggccgaaggtgatgatagggaggtggaa
accaagctgttagtccatcttcagtttgataaattcagccttgtcaagttcctactgcgc
aaccggctgaagattgtgtggtgtactcgtttggctagggcagaagaccaggatgagagg
aagaaaattgaagaggaaatgacgggattaggtcctgagttggcctcaatagtagagcag
ttgcatgctacaagggcgactgcgaaggagaggcaaaagaacttggaaaaaagtataaga
gaagaagctcgccgattgaaggatgagagcactggagagggggacacagggaggaggggg
cttgctgatagggattctgagagtggttggttaaaaggtcagcgccaacttcttgatctg
gatagccttgcctttgaacaaggtggcttttttatggcaaaaaagaagtgcgaccttcca
gatgggtcttacaggcatctcagcaaggggtatgaagaaattcatgtaccagcattgaag
gctaagccagtcgattccaatgaaaagtttataaagatatctgccatgcctgactgggca
caaccagcatttaaaggaatgactcagttgaacagggtacagagtaaggtttatgagact
gccctcttcaatccagacaacattcttctgtgtgctccaacaggggctgggaagactaat
gttgccgttctcactatacttcagcagatcgcactgcacagaaattctgatggttcattt
aaccataatgaatataaaattgtttatgttgcacctatgaaagcccttgtagcagaagtt
gttggaaatttgtctaatcgtctgcaggattatgatgtcaaagttagggagctcagtgga
gaccagacattaactcgccaacaaatagaagaaactcaaattattgtcacaactcctgag
aagtgggatatagttacccgaaagtctggtgatcgcacttatacacaacttgtgaaactt
cttatcattgatgaaattcatcttcttcatgataatcgaggacctgttcttgaaagtatt
gttgctagaactgtaaggcagattgaaacaacaaaggaacatattcgattggtcggattg
tccgctactcttcccaattatgaagacgtggcattgtttttacgtgttgatctcaagaaa
ggattgttttattttgataatagttatagacctgttcctctttctcaacagtacgttgga
attacagtaaagaagcctcttcagagattccagttgatgaatgatatctgttatgagaaa
gttatgggtgtagccggaaagcatcaggttctcatctttgtccattccaggaaagaaact
gccaagacagctcgtgctatccgagatactgcacttgctaatgatacacttggtaggttt
cttaaagaagatagtgctagccgggaaattctccatactcatactgatcttgtgaagagc
aatgatcttaaagatcttctcccatatggttttgcaattcatcatgctggtatgactagg
actgaccgccagcttgttgaggatctctttgctgatggacatgtacaagttttagtttcc
actgcgactcttgcctggggtgtgaatctccctgctcatacggtgattattaaagggaca
cagatctacaatccagaaaagggtgcctggactgaactaagtcctcttgatgttatgcag
atgctgggtcgtgctgggaggccccaatatgactcatatggagagggaataattattact
ggacacagtgaattgcaatattatctatcccttatgaaccagcaactccctattgaaagc
cagtttgtgtctaagttggctgatcagttgaatgcagaaattgttcttggcactgttcaa
aatgccagagaagcatgtaattggattggatacacttatctgtatgtacgaatgatacga
aatccttcactctatggtctggctcctgatattctcacaagagatataacactggaggaa
aggagggctgatctgattcattcagctgccaccatcttagataaaaacaatttggtcaag
tatgataggaaaagtggctatttccaggtcacagacttgggtcgcattgcaagtttttat
tacataactcatggaacaatatccacgtataatgagcacttgaaacctacgatgggtgat
atagagctttgccgattgttctcgctgagtgaagaatttaaatatgtaactgtaaggcag
gatgagaagatggaactggcaaaacttttggatcgtgttcctattcccatcaaggaaagc
ctggaagagcctagtgccaagattaacgttttgctgcaagcatacatttcacagttaaag
cttgaaggactctctctgacatctgatatggtttttataacccagagtgctggacgactt
ctgagagcactttttgagattgtcttgaaacgaggttgggcacagttagctgagaaggct
ttgaacttgtgcaagatggtaaacaagaggatatggagtgttcaaacacctcttcgtcaa
ttcaatggaatccctaatgatatattgatgaaattggagaagaaagacttgtcttgggaa
aggtattatgacctgtcatcacaggagattggcgagcttattcgagcaccaaagatggga
cggactcttcataaatttatccatcaatttccaaaattgaatcttgcagcacatgttcaa
cctattactcgcacagttttgagggttgagctcatgataactccagattttatgtgggag
gacagaatccatggatatgttgagccattctgggtcattgtggaggataacgatggggaa
tacattcttcatcatgagtattttatgctaaagaaacagtatattgatgaggaccacact
ctcaatttcacagtgccaatttatgagccacttccccctcagtactttattcgtgttgtc
tcagatagatggcttggttcacaaactgttttacctgtttctttcaggcacctcatcttg
cctgaaaagtatccgccaccaactgaattattggatctgcagccgctgccagtttctgcc
ttgagaaattcatcatacgaagctatctatcaggattttaagcattttaatcctgtccag
acacaagtcttcactgttctttataattccgatgacaatgtcttagttgctgctccaaca
gggagtgggaagactatatgtgctgaatttgctattttgaggaatcatcaaaagggactt
gatagtgtcatgcgtgttgtttatattgcaccaattgaagctcttgcaaaggaacgcttt
cgtgattgggagaagaaatttggaggtggtcttaaattgcgggtggttgaattgactgga
gaaacggcaactgacttgaagcttcttgagaaaggtcagattattatcagtaccccagag
aaatgggatgctttatcccgccgctggaaacaacgaaagcatattncacaagttagtctc
ttcatagttgatgagctccacttaattgggggccagggtggtcctgttctggaggtgatt
gtctccaggatgagatatattgccagtcaggttgaaaacaagatccgtattgttgccttg
tctacttctcttgcaaatgcaaaagatctgggagaatggattggagctacatctcatggt
ctttttaattttccccctggtgttcgtcctgtgcctttggaaatacatattcaggggata
gatattgctaattttgaggcaaggatgcaagcaatgacaaaaccaacttacactgcaatt
gttcaacatgccaagaatgggaaacctgctcttgtttttgtgcctactaggaagcatgtg
cggcatacagcagtggatctgatgacatactctaatgcagatggtggagagaagcctttc
ttattgcggcctccaggagagattgaaccttttcttaacaggattaatgatgaaatgttg
aaagtcacattacggcaaggagtaggatacttgcatgagggcctaagcaactttgatcag
gaagttngtacacagctatttgaagctgggtggattcaggtctgtgttatgagcagttca
ctgtgttggggagtgacattgtcagcccatttggtagttgtgatgggtacgcaattctat
gatggacgggaaaatgcacagtcagattaccctgttactgatcttctgcaaatgatgggt
catgccagtaggcctctgattgacaactcaggaaaatgtgtcatcctgtgtcatgcacct
agaaaggagtactacaagaagttcttgtatgaagcattccctgttgaaagccatcttcat
cacttcttgcatgataacttgaatgctgaagtggttgctggaattattgagaacaagcaa
gatgctgttgattatcttacgtggacgtttatgtacaggaggctcacgcaaaatcccaac
tattacaatttacaaggagttagtcacaggcatctttctgatcacctctcagaacttgtg
gaaaatacattgagtgacttggaagcaagcaggtgtgttgcaattgaggatgacatggac
ctttcgccctccaatcttggtttgatagcatcttattattacatcagttacacaactatt
gaacggttttcttcctctctgacatctaaaacaagaatgaagggtctactggaggtttta
tcatctgcctcagaatatgctcagattccaatacgtcctggggaggaagacgtggttcgg
aggttaattaatcaccagaggttttcttttgacaaccctaaagttacagacccccacatc
aaagctaatgctttgcttcaggcccacttctccaggcaaccagtaggtgggaaccttgca
ttggaccagcgagaagtgcttctttctgcaaatagactcctccaagcgatggtggatgtg
atctcaagcaatggttggctgagcctggctcttcttgctatggaagtcagtcaaatggtg
acacagggactgtggaatactgattccatgcttttgcagctccctcacttcacaaaggag
cttgctaagagatgccttgaaaaccctgggaagaaaattgagtctgtgttcgatttagtg
gagatggaggatgatgagaggcgtgaactattgcagatgtcggatttgcagctgttggat
attgcacgtttttgcaatcgtttccccaatattgacatgtcatatgaggtactggatagt
gactcggtgcgggctggggaggaggcaacagtcctagtgactcttgagcgtgatttggag
gggaggacagaagtaggacctgttgatgctcccaggtatcccaaagccaaggaggaagga
tggtggcttgctattggcgatcctaagaataacttattgcttgcaattaaaagggtttcc
cttcaacggaaagttaaagcaaaactggattttaccccctctgaagctggaaggagatcc
tatactctttatttcatgtgtgactcttacatgggctgtgatcaggaatataccttcact
gttgatgtcaaggagctgctggtgatgaggcctagtgacactgaatga
DBGET
integrated database retrieval system
