Prosopis cineraria: 129319876
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Entry
129319876 CDS
T09047
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH1 isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
pcin
Prosopis cineraria
Pathway
pcin03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcin00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
129319876
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcin03019
]
129319876
03012 Translation factors [BR:
pcin03012
]
129319876
Enzymes [BR:
pcin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
129319876
Messenger RNA biogenesis [BR:
pcin03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
129319876
Translation factors [BR:
pcin03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
129319876
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
DEAD
AAA_22
nSTAND3
T2SSE
Rad17
Cas3-like_C_2
ATPase
Motif
Other DBs
NCBI-GeneID:
129319876
NCBI-ProteinID:
XP_054820950
LinkDB
All DBs
Position
Unknown
AA seq
1016 aa
AA seq
DB search
MSICSRPWHFFAKHPHVPKLPGRPRVSTSNMSYRPNYRGGRRGGATSSGRGGGGGGRGGG
GQRWWDPVWRAERLRQMQGEKEVFDEKEWWDKIEKMKRGGEQEMIIKRNYSREDQQTLAD
MAYELGLYFHAYNKGKTLVVSKILLPDYRADLDERHGSTQKEIKMSSDIERRVGSLLNNT
QPRGAGSVNVPSTTTNEKQKQTITTIKLLSAEQTDSSNEKLSVELKERQENMQASDSLKT
MKSFRENLPAFKMKSEFLKAVQENQVLVVSGETGCGKTTQLPQFILEEEISCLRGASCNI
ICTQPRRISAISVAARVSAERGESLGETIGYQIRLEAKRSAQTRLLFCTTGVLLRRLVQD
PELTGISHLMVDEIHERGMNEDFLIIILHDLLPRRPDLRLILMSATINADLFSKYFTNAP
TMHIPGFTFPVVELFLEDALEKTRYSIKSEFDNFEGNSRRRRKQEAPKKDPLTELFEDID
VDNHYKNYSLHARKSLEAWSGLKVDLGLVEATIEYICRNEGDGAILVFLTGWDDISKLFD
KLKGNNFLGDPSKFLILPLHGSMPTINQREIFDRPPPNKRKIVIATNIAESSITIDDVLY
VIDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAGRVQPGVCFRLYPKVIHDAMPQ
YQLPEILRTPLQELCLHIKSLQLGTVGSFLAKALQPPDPLAVENAIELLKTIGALDDKEE
LTPLGRHLCTMPLDPNIGKMLLMGSIFQCLNPALTIAAALAYRDPFVLPINRKEEADEAK
RSFAGDSCSDHIALLKAFEEWKDAKRRGQDRQFCWDNFLSSVTLQMIDDMRMQFLNLLSD
IGFVDKSRGASAYNQYSHDLEMICAILCAGLYPNVVQCKRRGKRTVFYTKEVGKVDIHPA
SVNAGIHLFPLPYMVYSEKVKTTSIYIRDSTNISDYALLLFGGNLNPSKSGEGIEMLGGY
LHFSASKSVVELIRKLRGELDKLLNRKIEEPGLDISAGGKGVVAAAVELLHSQNTR
NT seq
3051 nt
NT seq
+upstream
nt +downstream
nt
atgtccatctgttctaggccttggcatttcttcgcaaaacaccctcacgttccgaagctt
ccgggccggccacgagtctcgacatcgaacatgtcttaccgacccaattaccgaggtgga
cgaaggggtggcgccacatcttccgggcgcggcggcggcggcggcgggcgtggaggcgga
gggcaaaggtggtgggaccctgtatggcgagccgagcgcctgagacaaatgcagggcgag
aaggaagtctttgacgagaaagaatggtgggataagattgagaagatgaaaagaggagga
gagcaagagatgatcattaagcgtaattatagtcgtgaagaccagcaaaccctcgctgac
atggcttatgaacttgggctgtacttccatgcatataacaaagggaaaactctcgtcgtt
agcaaaattctgttgcctgattatcgtgctgatcttgatgaacgtcatggatccacacag
aaggagattaaaatgtcctcagacatcgaaaggagggtaggatctcttttgaataatacc
caaccccgtggggcaggatcagttaatgtgccttccacaacaaccaatgagaagcaaaag
caaacaataactactataaaacttctttctgccgagcagactgattcttccaacgagaaa
cttagtgttgaactcaaagaaagacaggagaacatgcaggcgagtgatagtttgaaaaca
atgaagtcatttagggaaaatcttcccgcatttaaaatgaagtccgagtttctgaaagca
gttcaagaaaatcaggtattggtagtttcaggagagacaggttgtggcaaaacaactcag
ctgccacagttcattctagaagaggagatatcatgtttacgtggagctagttgcaatata
atttgtactcaacctcgtcgtatatctgcaatttctgttgcagctcgagtatcagctgaa
aggggggagagtcttggtgaaacaattggttaccaaattcgacttgaagcaaaacgctca
gctcaaacacgcctcttattttgcaccactggcgtattgcttcgtcggctggttcaagac
cctgagttaactgggattagtcatttgatggtagatgaaatccatgaaagagggatgaat
gaagactttttgatcataattttgcatgaccttctgcctcgccgtccagatctgcgcctc
attctaatgagtgccaccattaatgctgacctattctctaagtacttcaccaatgcccca
acaatgcacataccgggatttacttttcctgttgtggagctcttcctagaagatgcactg
gagaaaactcgatacagcatcaagtcagagtttgacaattttgaggggaattcaaggagg
aggagaaaacaagaagctcctaagaaggatcctctgactgaattgtttgaggatattgat
gtagacaatcactacaaaaattacagtttacatgctagaaagtctcttgaagcttggtct
ggtttgaaggttgatttgggtttggtagaggcaacaattgaatatatatgtcgaaatgag
ggtgatggagcaattcttgtatttcttactggctgggatgatatttccaaactatttgac
aaacttaaaggaaataactttcttggagatcctagcaagtttctgattcttcctttacat
ggttcaatgcctaccatcaaccaacgtgaaatatttgaccgtcctcctcctaacaagaga
aaaattgtaatcgctacaaatattgctgagagtagcatcaccatagacgatgtattatat
gtcatagactgtggaaaagcaaaggagactagttatgatgccttaaacaagcttgcctgt
ctgttaccatcatggatttcaaaggcttccgctcatcagagacgagggcgtgctggtcgt
gtgcagcctggagtttgttttaggttgtatccaaaagtgatccacgatgcaatgcctcag
tatcagttgcctgagattctccggacaccattgcaagagttgtgcctgcacatcaaaagc
ttgcagcttggaactgtaggatcatttctagcaaaagcacttcaacccccagatcctctt
gctgtggagaatgctattgaacttctgaaaacaattggggcattagatgataaggaggag
cttactccactgggtcggcatctttgcaccatgcccttggacccaaatatagggaagatg
ctgctgatgggttctatttttcaatgtctcaatcctgccttgactatagctgctgctctt
gcatatcgggacccatttgtcttacccataaacagaaaagaggaagctgatgaggcaaag
cgatcttttgctggtgattcttgcagtgatcacatagcccttctgaaagcatttgaagaa
tggaaggatgcaaaacgtagaggacaggacaggcaattctgctgggataattttctttct
tcggtaaccttgcagatgattgatgatatgagaatgcagtttctcaatttattatcagac
attggatttgttgacaagtccaggggcgctagtgcttacaaccagtacagccatgatttg
gagatgatttgcgcgattctttgtgctgggctctacccaaatgttgtgcagtgcaaaaga
agaggaaaacggacagttttctacactaaagaagttgggaaggttgatatccatcctgca
tctgtcaatgcggggattcatctcttccctctgccctacatggtgtacagtgaaaaggtt
aaaacgaccagtatttatatcagagactcaaccaacatatcagattatgctctacttcta
tttggtggtaatcttaaccctagtaaaagtggggagggcatagagatgctgggaggttac
cttcatttctctgcttcaaagagtgtcgttgagctaataaggaaattgcgcggggagctt
gacaaactattaaacagaaagattgaagaaccaggattggacatttctgctggaggaaag
ggagtggttgctgctgccgtggagctactgcatagtcagaatacaagatga
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