Prosopis cineraria: 129320088
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Entry
129320088 CDS
T09047
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH9 isoform X1
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
pcin
Prosopis cineraria
Pathway
pcin03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcin00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
129320088
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcin03019
]
129320088
03041 Spliceosome [BR:
pcin03041
]
129320088
03009 Ribosome biogenesis [BR:
pcin03009
]
129320088
03016 Transfer RNA biogenesis [BR:
pcin03016
]
129320088
Enzymes [BR:
pcin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
129320088
Messenger RNA biogenesis [BR:
pcin03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
129320088
Spliceosome [BR:
pcin03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
129320088
Complex C
U4/U6.U5 tri-SnRNP related factors
129320088
Ribosome biogenesis [BR:
pcin03009
]
Eukaryotic type
Pre-60S particles
Helicases
129320088
Transfer RNA biogenesis [BR:
pcin03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
129320088
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
ResIII
Helicase_C
ATPase_2
nSTAND3
Xre_MbcA_ParS-like_N
Motif
Other DBs
NCBI-GeneID:
129320088
NCBI-ProteinID:
XP_054821238
LinkDB
All DBs
Position
Unknown
AA seq
990 aa
AA seq
DB search
MGSLKRKFLEDESDETCPSQRQQGEYASELVDEPVACVHDVSYPEGFVLSPQSIASHHSD
PAKKFPFTLDPFQSEAISCLEKGESVMVSAHTSAGKTVVALYAIAMSIHNGQRVIYTSPI
KALSNQKYREFKEEFSDVGLMTGDVTIDPNASCLVMTTEIWRSMQYKGSEVTREVAWIIF
DEVHYMRDRERGVVWEESIVMSPKNSHFVFLSATVPNAKEFADWVAKVHQQPCHIVYTDY
RPTPLQHYIFPSGGNGLYLVVDDKGKFREDSFQRALNALIPNNEGNNKRENGKLKGLALA
RVGEESDIFKMVKMIIQREYDPVILFSFSKRECELLAMQMAKMDLNGDDEKENIERIFWS
AMDMLSDDDKKLPQVSNMLPLLKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFS
IGLNMPAKTVVFTNVRKFDGDKFRRISSGEYIQMSGRAGRRGIDERGICILMVDEKMEPS
TAKMMVKGAADSLNSAFRLSYNTVLNQMCCEDGDPENLLRNSFYQFQADRAIPDLEKQIK
GLEEERESIVIEEEVKLKDYYNLLEQYRLLNREVRDIVLSPRYCLPFLQPGRLVSLQCSS
SNEDLAPSFIEDQVTWGLVINFQSIKSSSEDNASVKPEDANYTVDVLTRCMVRKEKFGKK
FVKIVPIKEVGDPVVVSVPISQINTISSLRLYIPKDLLSLEARENMLKKVSETLSRFAEK
GLPLLDPEDDMKVHSNSYKKASRRLEALERLFEKHEIVKSPCLKQKLKALHKKQELATKI
KSIKRTIRNSTALAFKDELKARKRVLRRLGYITSENVVELKGKVAGEISTADELTLTELM
FNGVLKDIKVEEMVSLLSCFVWQEKVHDAAKPREELALLFSQLQETARRVAQLQLECKVQ
IDVESFVSSFRPDIMEAVYAWAKGSKFYDIMEITQVFEGSLIRAIRRLEELLQQLIQAAK
SIGETQLEAKFEEAVSRIKRDIVFAASLYL
NT seq
2973 nt
NT seq
+upstream
nt +downstream
nt
atggggtcattgaagaggaagtttcttgaagatgaatctgatgaaacttgcccttcgcaa
agacaacagggagaatatgcttcagaattggttgatgaacctgtggcatgtgtgcatgat
gtttcttacccagagggttttgttctgtctcctcagtccatagcttcacatcattctgac
cctgccaaaaagttccctttcactcttgacccttttcagtcggaagctatcagttgcctt
gaaaaaggcgaatctgtcatggtatctgcgcatacatctgctggaaaaacagttgtcgcg
ttatatgctattgctatgtctattcataatggacaacgagtgatatacacttcacctatt
aaggcactgagcaatcagaagtatagagagtttaaagaagaattttctgatgttggtctg
atgactggagatgtaacaattgatcccaatgcttcttgcttggtgatgactacagaaatc
tggcgtagtatgcagtacaaaggatcagaggtcacaagggaggtggcttggatcattttt
gatgaggtacattacatgcgtgatcgtgaaagaggtgtggtttgggaggagagcattgtc
atgtcgcccaagaattcccattttgtttttttatctgcgactgtgccgaatgcaaaggaa
ttcgctgattgggttgccaaggtgcaccaacagccttgtcatattgtttatactgattac
cgaccaactcctctccagcattatatttttccttctggaggtaatggtctgtacttggtt
gtggatgacaagggaaaatttcgtgaagacagttttcaaagagctttaaatgccctcatt
cccaataatgagggtaataataaaagggaaaatggcaagttgaagggcttggccctagct
agagttggtgaagaaagtgacatatttaagatggtgaaaatgatcattcagcgcgaatat
gatcctgttatacttttcagctttagcaaacgagagtgtgagctacttgcaatgcagatg
gcaaaaatggaccttaatggggatgatgaaaaggaaaacatagaaagaatcttttggagt
gctatggatatgctttcagacgatgataagaagctacctcaggtttcaaacatgttgccc
ttgctgaaacgtggaataggagtacaccactctggcttgctcccaattttgaaggaagtg
attgagattttatttcaagaagggctaattaagtgtttgtttgccacggagaccttcagc
atcggtttgaacatgcccgcaaaaacagttgtttttacaaatgtccgaaaatttgatggg
gataaatttaggcggatatccagtggtgaatatatacagatgagtggtcgtgctggtcga
cgaggtattgatgaacggggaatttgtatcctcatggttgatgagaagatggaaccttct
actgctaaaatgatggttaaaggtgcagctgacagtttaaacagtgcctttcgattaagc
tacaacacagttttgaaccagatgtgctgtgaggatggtgaccctgaaaatttgcttcgt
aattctttttatcagttccaagctgatcgtgccattcctgatcttgagaaacaaataaag
ggtcttgaagaagagagggaatcgattgtgattgaagaagaggtcaaattaaaggattat
tacaatctgctggagcagtataggcttctgaacagagaggttcgtgacattgtattatct
ccaaggtactgtttaccctttttacagcctggcaggctcgtgtctctccaatgcagttca
agcaatgaagatcttgccccgtcatttattgaggaccaggtgacttggggtttggtcatt
aattttcaaagcatcaagagttcttctgaagataatgcaagtgtaaaacctgaagatgca
aattacactgttgacgttcttacaagatgtatggtgaggaaagaaaaatttgggaaaaaa
tttgttaagatagtccccataaaagaggttggagatcctgtagttgtctcagttcctatc
tctcagattaacacaataagcagtctgcgcctatatattccaaaggatcttctgtcattg
gaagctcgggaaaacatgctgaagaaagtgtcagaaactctttctagatttgctgaaaaa
gggttgccccttctagatcctgaagatgacatgaaggttcacagcaactcttacaaaaag
gcatctcggaggttagaggctttggagcggctgtttgagaagcatgaaatcgtaaagtct
ccatgtttgaagcaaaaactaaaagctttgcataagaagcaagaactggctacgaagata
aagtcaattaagagaacaataagaaattctactgctttggcttttaaggatgaacttaag
gcaagaaagagagttcttcggaggctaggatatattacaagtgagaatgtcgtggaactg
aaagggaaagttgctggtgaaattagcaccgctgatgagctgaccctgactgaactcatg
tttaatggggtcttaaaggacataaaggtggaggagatggtttctctgctctcttgtttt
gtctggcaagagaaggtccatgatgctgctaagccccgggaagaacttgccctgctcttt
tctcaattgcaagaaactgctaggagggttgcacaacttcagcttgagtgcaaggttcaa
attgatgtggagagtttcgtgagttcatttaggcctgatattatggaggctgtttatgca
tgggcgaaaggatcgaaattctatgatatcatggaaattactcaggtttttgagggtagc
ttgatcagggcaattagacgactcgaggaacttcttcagcagctaatacaggcagccaaa
tccattggagaaacgcagctcgaggctaagttcgaagaggctgtttcaaggatcaagagg
gacattgtgtttgccgcatcactctatttatag
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