Prosopis cineraria: 129322640
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Entry
129322640 CDS
T09047
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPB1 isoform X1
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
pcin
Prosopis cineraria
Pathway
pcin03022
Basal transcription factors
pcin03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pcin00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
129322640
09124 Replication and repair
03420 Nucleotide excision repair
129322640
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pcin03021
]
129322640
03400 DNA repair and recombination proteins [BR:
pcin03400
]
129322640
Enzymes [BR:
pcin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
129322640
Transcription machinery [BR:
pcin03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
129322640
DNA repair and recombination proteins [BR:
pcin03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
129322640
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ERCC3_RAD25_C
Helicase_C_3
ResIII
Helicase_C
SNF2-rel_dom
Motif
Other DBs
NCBI-GeneID:
129322640
NCBI-ProteinID:
XP_054824914
LinkDB
All DBs
Position
Unknown
AA seq
770 aa
AA seq
DB search
MGHGHGEKGRPLKKFKAAAKLDDPRKGFVDDDDVYMGDDGYDDDGEKDKTKDFSKLELKK
DHVNRPLWACGNGRIFLETFSPLYKQAYDFLIAIAEPVCRPESMHEYNLTPHSLYAAVSV
GLETETIISVLNKLSKTMLPKEMIKFIQDSTANYGKVKLVLKKNRYFIESPFPEVLKTLL
RDEVISRSRIASEGATGDGFTISKTAGEIEGTHDELLNEAEVAAAAEEKETHSFEIDPSQ
VENVKQRCLPNALNYPMLEEYDFRNDTVNPDLDMELKPQAQPRPYQEKSLSKMFGNGRAR
SGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIRDENICRFTS
DSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRK
VISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCP
MTKEFFAEYLKKENSKKRQALYVMNPNKFRACEFLIKYHETQRGDKIIVFADNLFALTEY
AMKLRKPMIYGATSHVERTKILQAFKTSKDVNTIFLSKVGDNSIDIPEANVIIQISSHAG
SRRQEAQRLGRILRAKGKLQDRMAGGKEEYNAFFYSLVSTDTQEMYYSTKRQQFLIDQGY
SFKVITSLPPAGEEASLNYYHLEDQLALLGKVLSAGDDAVGLEQLEEDADEIALNNARRS
TGSMSAMSGAKGMVYMEYSTGRNKGQAQIKSKPKDPSKRHILFKRRYGAH
NT seq
2313 nt
NT seq
+upstream
nt +downstream
nt
atgggacacgggcacggcgaaaaaggccgacccttaaaaaagttcaaggccgccgctaaa
ttggacgatccccgaaaaggattcgtcgacgacgacgatgtatatatgggcgatgatggt
tatgacgacgacggtgagaaagacaagactaaagattttagcaagttagagcttaaaaaa
gatcacgtgaatcggcccctttgggcttgcggcaacggtcggatattcctcgagaccttc
tctcccttgtacaaacaagcttatgatttccttattgccatagcggaacccgtttgtagg
ccggagtcaatgcacgagtacaacctcactccacattcactgtatgctgcggtctcagtt
ggtctggagacagaaacgatcatatcagttttgaacaagttatccaagacgatgcttcct
aaagagatgataaagttcattcaggattcaaccgcaaattatggcaaagtaaagcttgta
cttaagaaaaatcgatacttcattgaatcaccatttccagaggtgttgaagacactgctt
agagatgaagttatatctcgatcaaggatcgcttctgagggtgcaactggtgatggattt
acgattagcaaaacagcaggtgaaattgaaggaactcatgatgagttgctgaatgaagca
gaagtagccgcagctgcagaagagaaagaaactcattcatttgaaatcgatccttctcag
gttgaaaatgtaaagcaacgatgcttgccaaatgcattgaattatcccatgttggaggag
tatgactttagaaatgatacagtcaaccctgatctggatatggagctaaagcctcaagca
caaccacggccatatcaagagaagagcctgagtaaaatgtttggaaatggaagagcaaga
tctggtatcatagttctaccttgtggtgcgggtaagtctcttgttggtgtttctgcagcc
tgccgtataaaaaagagctgtctttgtttggcaacaaatgccgtatctgtggaccagtgg
gcgtttcagtttaagctatggtcgaccatccgagatgaaaatatctgtcgtttcacatct
gatagcaaggagaggttccgtggtaatgctggagtggttgtgaccacatataatatggtt
gcttttggtggcaaacggtcagaagaatctgagaagatcattgaagaaattagaaacaga
gaatggggattgcttctcatggatgaggtgcatgtggtccctgcacacatgtttcggaag
gtcattagcctcactaaatcccactgcaaacttgggctcacagccacacttgtgagagag
gatgaaagaattacagatctgaattttctcattggtcccaagttgtatgaagcaaattgg
ttggatctcgtgaaaggtgggtttattgcaaatgtacagtgtgctgaagtatggtgtcca
atgacaaaagaattttttgcggagtatttgaagaaggagaattccaagaagaggcaggcg
ctctatgtgatgaatccaaataagttcagagcatgcgagtttctcataaagtaccatgaa
acacagcgtggtgataaaattatagtctttgctgataatctttttgctctaactgagtat
gccatgaaacttcgcaaaccaatgatatatggtgctacaagccatgttgagaggacaaaa
attctacaagcattcaaaactagcaaagatgtcaatactatattcctttccaaggtgggt
gataactcaatagacattccagaagcaaatgtgataattcagatctcttcacatgctggt
tcaaggcgtcaagaagcccaacgtctaggccgtattcttagggcaaagggtaagcttcag
gataggatggcaggtggcaaggaggagtataatgcattcttttattctctcgtgtcgaca
gatacccaggagatgtactactcaaccaagaggcagcaatttttaattgatcagggttat
agctttaaggtaattacaagcttgcctccagctggagaagaagcttcattgaattattat
catcttgaggatcaattggccctccttggaaaggtcttgagtgctggtgacgatgctgtt
ggtctagagcaactagaagaagatgcagatgaaatagctctcaacaatgcccggcgttcg
acaggatccatgagtgccatgtcaggtgcaaagggaatggtttacatggagtacagtact
gggcgtaacaaaggtcaagcgcagatcaagagcaagccaaaagatccatctaagcgacac
attttatttaaaagacgctatggcgcacattag
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