Paraburkholderia caledonica: CUJ87_04910
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Entry
CUJ87_04910 CDS
T05740
Name
(GenBank) sigma-54-dependent Fis family transcriptional regulator
KO
K21405
sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
Organism
pcj
Paraburkholderia caledonica
Brite
KEGG Orthology (KO) [BR:
pcj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pcj03000
]
CUJ87_04910
Transcription factors [BR:
pcj03000
]
Prokaryotic type
Helix-turn-helix
Other families
CUJ87_04910
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Sigma54_activ_2
GAF
AAA_lid_14
HTH_8
PAS_4
HTH_30
HTH_23
AAA
AAA_5
HTH_7
HTH_29
HTH_28
HTH_22
AAA_16
HTH_Tnp_ISL3
AAA_7
HTH_1
Parvo_NS1
NUMOD1
AAA_22
AAA_2
HTH_Tnp_IS1
TIP49
HTH_17
Motif
Other DBs
NCBI-ProteinID:
AXF13827
LinkDB
All DBs
Position
PHRS4_A:1114527..1116500
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AA seq
657 aa
AA seq
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MRDNTYHAVTPFAPNETCWLTPSIQKSHERSEVFGLSESMRPDYDVLPAGELALKLEQNR
ILCAHATPVMETLHEQIVNTQSMIVLTDAEGLILHSIGDDDFLRRAEKVALRPGANWAEN
RQGTNAIGTALAERSATVVHGEQHYLAANRFLTCSSVPILDPYGDLIGVLDVTGDHRSYH
QHTMALAKMSVQMIENHLFANTFRETLQIAFHGRPEFLGTLMEGIAAFTCDGRFLSANRS
AQFQLGLPLAGLRAHTLSSLFGLTSAQLIDRLRTHRDRHLSLNLSNGAVVCANVRFRRAT
DAEEPARSRTPTEAAAAPRSEPFATPTHPLSKLGYLDTGDPQIAAVIAKVRKVIGKNIPI
LITGETGTGKELLAQAIHNDSPRRVGPFVAVNCASIPETLIESELFGYEEGAFTGARRKG
AVGKLLQANGGTLFLDEIGDMPYPLQVRLLRVLQERLVNPLGSTKSIPVDVAIICATHRD
LREMIAQSRFREDLYYRLNGLVVKLPPLRERTDLSAVIKKMLDCAAAENGGGQALSIADD
VMTLFGQCAWPGNFRQLGNLLRTAAVMVDADGEIRREHLPDDFFDDLRVVGPSSPHGVDV
LSLPSGRLHDVAASVIANAVAQHGGNVSAAARTLGISRNTIYRKLPAHGANNSEDAA
NT seq
1974 nt
NT seq
+upstream
nt +downstream
nt
atgcgcgacaacacgtatcacgccgtaaccccattcgcccccaacgagacttgctggctc
actccgtcgattcagaagtcccatgaacgctcggaagtgttcggtctcagcgagtccatg
cgtcccgattacgatgtgctgccggccggtgaactcgcgctgaagctcgagcagaaccgc
attctttgcgcgcacgccacgccggtcatggaaaccctccatgagcagattgtgaacact
cagagcatgatcgtgctgacggacgccgaaggtctgatacttcattcgatcggcgacgac
gacttcctgcggcgcgccgaaaaagtcgcgctgcggcccggcgcgaactgggcggaaaac
cggcaaggcaccaatgcaatcggcacagcgctcgccgagcgcagcgcaaccgtcgtgcac
ggcgagcagcactatctcgccgccaaccgcttcctgacctgctccagcgtgccgattctc
gatccgtacggcgatctcatcggcgtgctcgacgtcacgggcgaccatcgcagctatcac
cagcacaccatggcgctcgcaaaaatgtccgtgcagatgatcgagaatcatctgtttgcc
aacacgttccgcgaaaccttgcagatcgcatttcatggccgtccggaatttctcggtacc
ttgatggaaggcattgctgccttcacgtgcgacggccgctttctgtccgcgaatcgcagc
gcgcagttccagctcggcttgccgcttgcggggttgcgcgcgcatacgctgtcgtcgctg
ttcgggcttaccagcgcccagttgatcgaccgtctgcgcacgcaccgcgatcgtcatctg
tcgctgaacctgagcaacggcgccgtggtgtgcgcgaatgtccggtttcgccgcgccaca
gacgccgaagagcccgcccgttcccgcacgccgacggaagcggcagcagcgccgcgcagc
gaaccgtttgcgacgcccacgcatccgctgtcgaagctcggttatctcgacaccggcgac
ccgcagatcgcggcggtcatcgccaaggtgcgcaaggtcatcggcaagaacatcccgatt
ctgatcaccggcgagaccggcaccggcaaggaactgctcgcgcaggcgatccacaacgat
tcgcctcgccgcgtcggccctttcgtcgcggtgaactgcgcgtcgataccggaaacgttg
atcgaatcggaactgtttggctacgaggagggcgcattcaccggcgcgcggcgcaaaggc
gccgtcggcaaactgttgcaggccaacggcggcacactttttctcgatgaaatcggcgac
atgccgtacccgttgcaagtgcgtttgttgcgggtgctgcaggagcgtctcgtgaacccg
ctcggctcgacaaagtccattcccgtcgatgtcgcgatcatttgcgcgacccatcgcgat
ttgcgtgaaatgatcgcgcagagccgctttcgcgaggatttgtactaccgtctcaacggc
ctggtcgtcaaattgccgccgctgcgcgaacgcaccgatttgtcagcggtgatcaaaaaa
atgctggattgcgcagcggccgagaacggcgggggccaggcactgagcatcgcagacgac
gtcatgaccctcttcgggcaatgcgcatggcccggcaacttccgccagctcggcaatctg
ctgcgcacggcggcggtgatggtggatgcagacggagaaattcgccgcgagcatcttcct
gacgatttcttcgacgacctgcgtgtcgtcggcccatcgtccccgcacggagtggatgtg
ttgtcgctaccgagcggacggcttcacgacgttgccgcgagcgtgatcgccaacgcggtc
gcgcagcatggcggcaacgtgtcggccgcggctcgcacgctcggcatctctcgcaatacc
atctatcggaagctgccggcgcacggcgcgaacaacagcgaagacgcagcgtga
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