Paraburkholderia caledonica: CUJ87_05465
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Entry
CUJ87_05465 CDS
T05740
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
pcj
Paraburkholderia caledonica
Brite
KEGG Orthology (KO) [BR:
pcj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcj03019
]
CUJ87_05465 (hrpA)
Enzymes [BR:
pcj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CUJ87_05465 (hrpA)
Messenger RNA biogenesis [BR:
pcj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
CUJ87_05465 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_N
HA2_C
DEAD
AAA_22
AAA_19
nSTAND3
T2SSE
AAA_30
NACHT
AAA_23
TsaE
PhoH
Myosin_head
acVLRF1
Motif
Other DBs
NCBI-ProteinID:
AXF13920
LinkDB
All DBs
Position
PHRS4_A:1242235..1246629
Genome browser
AA seq
1464 aa
AA seq
DB search
MSNVPKSPAAANENAAPAADQANSGDAQRRPEKDAKQSNPDAPRQAREPHRAGERAQASS
NRQNASHTSKDVERAEPPGETRDAPESRERGEQRKQRGEQRGQSGQRDQRGQGRQPEAGK
PSRQQPPREPRAPREARVVQPNPVPPITFPEALPVSGRRDEIAKAIAENQVVIVSGETGS
GKTTQLPKICLALGRGLGAGGSGLIGHTQPRRIAASATGRRIAEELGTPFGEVVGYKVRF
TDNLSPGASVKLMTDGILLAETQTDPLLKAYDTLIIDEAHERSLNIDFLLGYLKEILVKR
PDLKVIVTSATIDADRFARHFGSEEKPAPVIEVSGRLYPVEVRYRPIEEDSPAVKAAQGT
SGTSGGPASRERAKTPRETGKERDRDLMEAIVDAVDELCREGPGDVLVFLPGEREIRDAA
EALRKHHPPHTEILPLFARLSAADQERVFRTSNARRIVLATNVAETSLTVPGIRYVVDTG
LARVKRYSYRNKVEQLQVESISQAAANQRAGRCGRVADGICIRLYDESDYQSRVRFTDPE
ILRSSLASVILRMKSLHLTAIETFPFIEPPPGRAIADGYQLLNELGAVDDDNQLTPLGRE
LARLPLDPRVGRMILAARDQQSLKEVLIIASALSVQDPRDRPIEAQEQADQAHRRFADER
SEFLQWLKIWNWFEEAIAHKKSNKQLHEECRKNFLSQLRLREWRDVHSQLLTVVREHGWR
LNEAEATFEQIHLALLTGLLGNIGLKADDEPYYLGARGIKFYLWPGSALVKKAGKWVMAA
ELVETSRLYARCIAKIEPEWIEKIGSHLLKKSLSEPHWEKRAAQVSAFERAVLYGLPIYH
RRRVSFGKQDPARARELFIRGALVEGEFDTKLGFFAHNRKLLADIEQLEHKSRRQDVLVD
DELIFAFYDQALPKGIYTGASFERWYRDELKKSGQPEDKLRLLYLSRDDLMRHEAAGVTT
DLFPKRMTMAGVEMALTYHFEPGSPRDGVTLAVPLYALNQVDARRCEWLVPGMLKEKTQL
LLKSLPQKLRRHCVPLPEYAAGFVDRHGAPRFGAGGLLEALIADIREQKQLMLKQSDFKL
ETLPPHLFMNFKVVDEHGRQLAMGRNLSQLRAELGGQAQQHFQKIASSAAGAALADAAGS
RADGAGTARTAPASSGPAQRGKSAAAPAPQTPSQGGAGGTALYENLTTWNFGKLPELLEI
RRGGQTLFGYPALVDRGTHCDVEVFDSPDEAARIHRAGLRRLFALQLKEPIKYLEKNLPG
LREMAMQFMTRGTQEELRDQLIDTALDRACLQDPLPDDDVSFHTRRDEGRSRLTLLAQEI
ARLVGQILGEYASVLKKLVQAKSFTAAHADMQNQLDALIGKRFVVDTPYSQLTHFPRYLK
GIALRIDKLKADPARDARQFAEFQPLLQNYQRAVAQRGGVPDARLSEFRWLLEELRVSLF
AQELRTPMPVSVKRLYKAWDSMQR
NT seq
4395 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaatgtacccaaaagtcccgccgcggcgaacgagaatgcggcgccggccgccgat
caggcgaactccggcgacgcgcagcgccgccccgaaaaggacgcgaagcaaagcaacccg
gacgcgcctcgccaggcgcgcgagccgcatcgcgccggcgaacgcgcgcaggcgtcttcc
aaccggcagaatgcgtcgcacacgtcgaaggatgtcgagcgcgcggagccgccgggcgag
acgcgcgacgcacctgaatcgcgtgaacggggcgaacaacgcaaacaacgcggcgaacaa
cgcgggcagagcgggcaacgcgaccagcgcgggcagggcaggcagccagaggctggaaag
ccatcgcgccagcaaccgccccgtgaaccgcgcgccccacgtgaggcgcgcgtggtgcag
ccgaatccggttccgccgatcaccttccccgaagcgctaccggtctcgggccgccgcgac
gaaatcgccaaggcgatcgcggaaaatcaggtggtaatcgtgtcaggcgaaaccggctcg
ggcaagaccacgcagttgccgaaaatctgccttgcgctagggcgcggcctcggcgcgggc
ggctcgggcttgatcggccacacacagccgcgccgcattgccgcttcggcgacgggccgg
cgcatcgctgaggagcttggtacgccctttggcgaagtggtcggctacaaggttcgtttc
accgacaacctgtcgccgggtgcatccgtcaagctgatgacggacggtattctcctcgcc
gaaacgcagactgatccgctgctcaaagcgtacgacacgctgatcatcgacgaagcgcat
gagcgcagtctgaacatcgactttctgctcggctacctgaaggaaattctggtcaagcgt
cccgatctgaaggtgatcgtgacgtcggcgacgatcgacgccgaccggttcgcgcgccac
ttcggcagcgaggaaaagcccgcgccggtaatcgaagtgagcgggcggctttatcccgtc
gaggtgcgctaccgtccaatagaggaggatagccccgccgtgaaggcggcgcagggtacg
tcaggcacatcgggcggtccggcgtcgcgtgaacgtgcgaagactccgcgagagaccggc
aaggagcgcgaccgcgatctgatggaagcgatcgtcgacgccgtcgacgaactatgccgc
gaaggccccggcgacgtgctggtgtttctgcctggcgagcgtgaaatccgcgacgccgca
gaggcgctgcgcaagcatcatccgccgcatacggaaatcctgccgctgttcgcgcgccta
tcggccgccgatcaggaacgcgtgttccgcacctccaacgcacggcgcatcgtccttgcg
acgaacgtggcggagacgtcgctcacggtgccgggcattcgctacgtggtcgatacggga
cttgcgcgcgtgaagcgctattcgtatcgcaacaaggtcgagcagttgcaggtcgagtcg
atctcgcaggccgccgcgaatcaacgggcagggcgctgcggccgggtggccgacggcatc
tgcattcgcctgtatgacgagagcgattaccagagccgcgtgcgcttcaccgatccggag
attctgcgttcgtcgctcgcgtcggtaattctgcgcatgaagtcgctgcatctgacggcg
atcgagacgttcccgttcatcgaaccgccgccgggccgcgcgatcgccgacggctatcag
ctgctgaacgaactcggcgccgtcgacgacgacaatcagctgacgccgctcggccgcgaa
ctcgcgcgtctgccgctcgatccgcgcgtcggccggatgattctcgccgcgcgcgatcag
caatcgctgaaggaagtgttgatcatcgcgagcgcgttgtcggtgcaagatccgcgtgac
cggccgatcgaggcgcaggaacaggccgaccaggcgcatcgccggtttgccgacgaacgc
tcggaattcctgcagtggctgaaaatctggaactggttcgaagaagcgatcgcgcacaag
aagtcgaacaagcagttgcacgaggaatgccggaagaatttcctgtcgcaattgcgtctg
cgcgaatggcgtgacgtgcattcgcaactgctgacggtggtgcgtgaacacggctggcgt
ctgaacgaagcagaagcgactttcgagcagatccatctcgcgctgctgacaggcctcctg
ggcaacatcggactgaaagccgacgatgagccctactacctcggcgcacgcggcatcaag
ttctatctgtggccgggctccgcgctcgtcaagaaagcgggcaagtgggtcatggccgcg
gaactcgtcgagacgagccgtttgtacgcccgctgcattgcgaagatcgagcctgaatgg
atcgaaaaaatcggctcgcatttgctgaagaagtcgctgtcagaaccgcattgggagaag
cgcgcggcgcaggtttcggccttcgagcgcgcggttctgtacgggctgccgatctatcac
cggcggcgcgtgagcttcggcaaacaggaccctgcgcgggcgcgcgaactgttcattcgc
ggcgcgctcgtcgaaggtgagttcgacaccaagctcggatttttcgcgcacaaccgcaag
ctgctggccgacatcgagcaactggaacacaagtcgcgccgtcaggatgtgctcgtcgac
gacgaactgatttttgcgttctacgatcaggcgctgcccaaggggatctacaccggcgcg
tcgttcgagcgctggtatcgcgatgaactgaagaaaagcggtcagcccgaggacaagctg
cgcctgctgtatctgtcgcgcgacgacctgatgcggcacgaagctgccggcgtgacgacc
gatctgttcccgaaacggatgacgatggcgggcgtcgaaatggcgctcacctatcacttc
gagccgggttctccgcgcgacggcgtcacgctcgccgtgccgctctatgcactcaatcag
gtcgacgcgcggcgctgcgaatggctcgtacccggcatgctgaaggagaagacgcaactg
ctgctcaagtcgctgccgcagaagctccggcgtcactgcgtgccgctgccggaatatgcg
gccggtttcgtcgaccggcatggggcgccgcgttttggtgctggcggtttgctcgaagcg
ctgatcgccgatattcgcgagcagaagcaactcatgctgaaacagtcggacttcaagctt
gagacattgccgccgcatctgttcatgaacttcaaggtcgtggacgaacacgggcggcaa
ctcgcgatggggcgcaatctgtcgcagctacgggcggaactgggcggccaggcccagcag
cacttccagaagatcgcatcgagcgcggcaggcgcggcgttggccgacgcggccggttcg
cgggcggacggggcaggaacggcgcggacggcgcctgcgtccagcggtccggcacagcga
gggaagagcgcggctgcgccggcgccgcagacgccgtcgcaaggtggcgcgggtggcacg
gcgctgtacgaaaacctcaccacgtggaacttcggaaagctgccggagttgctcgaaatc
cgtcgcggcgggcagacattattcggctatccggctctcgtggatcgcgggacgcattgc
gacgtcgaggtgttcgattcgccggatgaggccgcgcgtattcatcgggcgggcctgcgt
cggctattcgctttgcagttgaaggagccgatcaagtacctggagaaaaatctgccgggc
ttgcgcgaaatggcgatgcagttcatgacgcgcggtacacaggaggagttgcgcgatcag
ctgatcgacactgcgctcgatcgcgcctgcctgcaggacccgctgcccgacgacgacgtc
agtttccatacgcgccgcgatgaaggacgtagccgcctgacgttgctggcgcaggagatt
gcgcggctggttggacagattcttggcgaatacgcgtcggtactgaagaagctggtgcag
gcgaagtcgttcacggctgcgcacgccgacatgcagaatcagctcgacgctctgatcggc
aagcgattcgtggtggacaccccgtactcgcagctcacgcattttccgcgttatctgaag
ggtatcgcgttgcggatcgacaaattgaaggctgatcccgcgcgcgacgcacggcaattc
gcggaattccagccactgctgcagaattatcagcgagcggtcgcgcagcgcggcggcgtg
cccgatgcacgtctgtccgagttccgctggctgctcgaagaactgcgcgtttcgctgttc
gcccaggaactgcgcacgccgatgcctgtgtcggtcaagcggctttacaaggcgtgggat
tcgatgcagcggtga
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integrated database retrieval system
