Paraburkholderia caledonica: CUJ87_07395
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Entry
CUJ87_07395 CDS
T05740
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
pcj
Paraburkholderia caledonica
Pathway
pcj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CUJ87_07395
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pcj03021
]
CUJ87_07395
03019 Messenger RNA biogenesis [BR:
pcj03019
]
CUJ87_07395
Transcription machinery [BR:
pcj03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
CUJ87_07395
Messenger RNA biogenesis [BR:
pcj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
CUJ87_07395
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
OB_RNB
S1CSD-TOTE-2
ATPase_2
AAA_25
AAA_22
Phostensin_N
Motif
Other DBs
NCBI-ProteinID:
AXF14251
LinkDB
All DBs
Position
PHRS4_A:complement(1669738..1671006)
Genome browser
AA seq
422 aa
AA seq
DB search
MHLSELKTLHVSELIEMANGLEIESANRLRKQELMFAILKKRAKTGDTIFGDGTLEVLPD
GFGFLRSPETSYLASTDDIYISPSQIRRFNLHTGDTIEGEVRTPKDGERYFALVKVDKVN
GQPPEASKHKIMFENLTPLHPNKVLLLEREMRGEENVTGRIIDMIAPIGKGQRGLLVASP
KSGKTVMLQHIAHAIKQNHPDVVLFVLLIDERPEEVTEMQRSVAGEVIASTFDEPAARHV
QVAEMVIEKAKRLVEMKNDVVILLDSITRLARAYNTVVPASGKVLTGGVDANALQRPKRF
FGAARNIEEGGSLTIIGTALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPSINL
NKSGTRREELLIKPEVLQKIWVLRKFIHDMDEVESMEFLLDKIRQTKSNSEFFDMMRRGG
GS
NT seq
1269 nt
NT seq
+upstream
nt +downstream
nt
atgcatttatccgagcttaagactctgcacgtgtccgaattgatcgagatggccaatggc
ctcgagatcgaaagtgcgaaccgcctgcgcaagcaggaattgatgttcgccattctaaaa
aaacgagccaaaacgggcgacacgatcttcggcgacggcacgcttgaagtgctgccggac
ggcttcggcttcctgcggtcgccggaaacttcctatctcgccagcacggatgacatttac
atcagcccgtcgcaaatccgccgcttcaacctgcatacgggcgacacgatcgaaggtgaa
gtgcgtacgccgaaagacggcgagcgctatttcgcgctggtgaaggtcgacaaggtcaac
ggccagccgccggaggcctcgaagcacaagatcatgttcgagaacctgacgccgctgcac
ccgaacaaggtgctactgctcgaacgtgaaatgcgcggtgaagagaacgtcaccggccgc
atcatcgacatgatcgcgccgatcggcaaaggccagcgcggcttactggttgcgtcgccc
aagtccggcaagaccgtgatgcttcagcacatcgcgcacgccatcaagcagaaccatccc
gacgtcgtactgttcgtgctgctgatcgacgagcgcccggaagaagtgacggaaatgcag
cgttcggtggccggcgaggtgatcgcctccacgttcgacgaacccgccgcgcgtcacgtg
caggtcgccgaaatggtgatcgaaaaagccaagcgcctcgtcgaaatgaagaacgacgtg
gttattctgctcgactcgatcacgcgtcttgcgcgcgcctacaacacggtcgtgccggct
tcgggcaaggtgctgacgggcggtgtggatgccaatgcattgcaacgcccgaagcgcttc
ttcggcgcggcgcgcaatatcgaagaaggcggctcgctcaccatcatcggcacggcgctg
atcgaaaccggcagccgcatggacgatgtgatttacgaagaattcaagggcaccggcaat
atggaagtgcaccttgagcgccgtctcgcagaaaagcgcgtgtacccgtcgatcaatttg
aacaagtccggcacgcgtcgcgaagaattgctgatcaagcccgaagtgctgcaaaaaatc
tgggtgttgcgcaagttcattcacgacatggacgaagtcgagtccatggaattcctgctc
gacaaaattcgccagacgaagagcaactccgagttcttcgacatgatgcgccgtggcggc
ggcagctaa
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