Paraburkholderia caledonica: CUJ87_09615
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Entry
CUJ87_09615 CDS
T05740
Symbol
hfq
Name
(GenBank) RNA chaperone Hfq
KO
K03666
host factor-I protein
Organism
pcj
Paraburkholderia caledonica
Pathway
pcj02024
Quorum sensing
pcj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CUJ87_09615 (hfq)
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
CUJ87_09615 (hfq)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcj03019
]
CUJ87_09615 (hfq)
03036 Chromosome and associated proteins [BR:
pcj03036
]
CUJ87_09615 (hfq)
Messenger RNA biogenesis [BR:
pcj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
CUJ87_09615 (hfq)
Chromosome and associated proteins [BR:
pcj03036
]
Prokaryotic type
Nucleoid associated proteins
Other nucleoid associated proteins
CUJ87_09615 (hfq)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hfq
LSM
SelB_WH1
Hfq_1
Motif
Other DBs
NCBI-ProteinID:
AXF14633
LinkDB
All DBs
Position
PHRS4_A:2178664..2179131
Genome browser
AA seq
155 aa
AA seq
DB search
MASAESHPQNDFMNAARKERKRVEIYLVNGIRLTGCIESFDQYLVMLRTPVGLQGIYKRA
ISTIQLDTGTRPAPRAGRPSHGEHTTRGPHGSREPREHREPREPRDSYGAPSSDRPAPER
GSASDAPVVVTRRRRLFGTGGDGGNHGNHGGGGHA
NT seq
468 nt
NT seq
+upstream
nt +downstream
nt
atggcttccgcagaatcgcatccgcaaaacgacttcatgaacgctgcgcgcaaagaacga
aagcgcgttgagatttaccttgtcaatggcatccgcctgacagggtgcatcgagtcgttc
gatcagtatctggtgatgctgcgcacgcccgtcggcttgcaaggcatctacaagcgcgcc
atctcgacgatccagctcgataccggaacccgtccggctccgcgcgcgggccgtccgtcg
catggcgagcacactacgcgcggcccgcacggctcgcgggagccgcgcgagcatcgggaa
ccgcgtgaaccgcgcgactcgtacggcgcgccgtcatccgaccgccctgcgccagagcgc
ggcagcgcgtcagacgcgcccgtagtggtaacgcgccgccggcgcctgttcggcacgggc
ggcgacggcggcaaccacggcaatcatggcggcggcggtcacgcgtaa
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