Paraburkholderia caledonica: CUJ87_09780
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Entry
CUJ87_09780 CDS
T05740
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
pcj
Paraburkholderia caledonica
Pathway
pcj03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pcj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
CUJ87_09780
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pcj03400
]
CUJ87_09780
Enzymes [BR:
pcj01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
CUJ87_09780
DNA repair and recombination proteins [BR:
pcj03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
CUJ87_09780
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
UvrD_C_2
AAA_11
Viral_helicase1
UvrD-helicase
SH3_13
Helicase_RecD
RecD_N
SLFN-g3_helicase
DEAD
AAA_22
MukB
UvrD_C
CbiA
Motif
Other DBs
NCBI-ProteinID:
AXF14663
LinkDB
All DBs
Position
PHRS4_A:complement(2217797..2220085)
Genome browser
AA seq
762 aa
AA seq
DB search
MSTFNQTVSAPLQLDDLGVNLPAPADFSIALAEGFARRIGALARRGGASAEAVRWAARAA
FAASRATAEGHVCVPLAALARRFEASTAEVRMALFASGMASDGSQVAAALRPLVIDAQGR
LYLARYYDYERRLARALVAHAGAPMRAGVFDSGRGVGGAGERSAEHAAGTLPASVRGRAG
GEKGTAFDSEAAVGTSANADTTHTLHQRLVRYFGPPKDDEIDWQRVAAVMALSGRLTIVS
GGPGTGKTTTVVGVLACLLDARADLRIALAAPTGKAAQRMQEALLARAGDLPPELAARLP
QTSYTLHRLLGSGPGGRFRHHRDNPLPYDVVVIDEASMIDVAMAAHLLDAIAPHTRLVML
GDKDQLAAVEAGAVFAELSARPAFSAQGVKRIAGALGIGEARLAHALPRLAEDVDEQPER
FPQADRPANYASDLFDAPPDDLFAALDAAGNLASNLASNVAGPRSADPYGADASAASARF
GTAGHESQSPLADCVVWLERNYRFGLESPIGRLSLAIRNGEASAALDVLLDDATQHAASL
YEDAHVALAERTVERLAAGFAPYANALAAALAAETPDPLPLFDALNRFRVLCATRLGPRG
VDQVNALMAAQVRRSAGVTLAVGAQWFAGRPVMVTRNDYALGLFNGDIGIALPGAGGALR
VYFRTADGGLRAVSPAALPPHDTAFALTVHKSQGSEFEHAVLMLPSTFSRVLSRELVYTA
ITRARERVEVIGASAVLAQAIATPTQRDSGLAARIEEASRGR
NT seq
2289 nt
NT seq
+upstream
nt +downstream
nt
atgagcacgttcaatcagaccgtatcggcgccgcttcaacttgacgatctcggcgtcaat
ttaccggcgccggcggatttcagcattgcgttagcggaaggcttcgctcggcgcatcggt
gccctggcgcgacgcggcggggcgtcggcggaagccgtcagatgggcggcgcgcgccgcg
ttcgcggcgagccgcgcgaccgcggaagggcacgtgtgcgtaccgctggccgcgctcgcg
cgtcggttcgaggcgtcgaccgccgaagtgcggatggccttgtttgcgagcggcatggcg
agcgatgggtcgcaagtggcagccgcactgcggcctctggtgatcgacgcacaagggcgg
ttgtacctcgcgcgttactacgattacgagcggcgtctcgctagggcgctggtcgcgcat
gcgggtgcaccgatgcgtgcgggtgtgtttgacagcggacggggcgttggcggcgcgggc
gagcggtcggctgagcatgccgccggaactttgccagcaagcgttcgcggccgagccggc
ggggaaaagggcacggccttcgatagtgaggccgcagtcggtacgagcgcgaacgccgac
accacccataccctccatcaacggcttgtgcgctacttcggccccccgaaagacgatgaa
atcgactggcagcgcgtggccgctgtcatggcattgtcggggcggctcaccatcgttagc
ggcggtccgggcacaggcaagactacaacggtggtcggcgtgctcgcgtgcctgctcgac
gcgcgcgccgatctgcgaatcgcgctcgcggcgcccaccggcaaggcggcgcaacgcatg
caggaagcgctgcttgcgcgtgccggggatttgccgcctgaactcgccgcgcgtttgccg
caaacttcgtacacgttgcatcgtctgctcggctcaggaccgggcgggcgcttccggcat
catcgcgataatcctctgccttatgacgtggtcgtgatcgatgaagcatccatgatcgac
gtcgcgatggcagcccacctgctcgacgccattgcgccgcacacgcggctcgtgatgctc
ggcgataaagatcagctcgcagcggtagaggccggcgctgtgttcgccgagctgagcgcg
cggcccgcgttcagcgcgcagggcgtgaagcgaatcgccggtgcgctcggcatcggcgag
gcgcgactcgcgcacgcactgccgcgactggccgaagacgtcgacgaacagccggagcgc
tttccgcaagctgatcgtcccgcgaattacgcgtcggatcttttcgatgcaccacccgac
gacctgttcgccgcgctcgacgcggctggcaacctagccagcaacttagccagcaacgtc
gccggccctcgcagcgcagatccgtacggcgccgatgcatcagccgccagtgcgcgattc
ggaacggcgggccacgagtcgcaaagcccactcgcggattgcgtcgtctggctggagcgc
aattatcgattcgggctcgaatcaccgattggccgtttgtcgctggcgattcgcaatggc
gaggcaagcgcggcgctcgacgtgctgctcgacgacgccacccaacatgccgcgtcgctt
tacgaagacgcgcacgtggcgctggccgaacgcactgtcgagcgcctcgcggccggtttc
gcgccttatgccaatgcgcttgccgcagcgttagccgcggaaactccggacccactgccg
ctatttgacgcattgaatcgcttccgggttttatgcgcgacccgcctgggcccgcgcggc
gtcgatcaggtgaacgcgctaatggccgcgcaggtgcggcgctcggccggcgtgacgcta
gcagtcggcgcgcagtggttcgccgggcggccggtgatggtcacacgcaatgactacgcg
ctggggctcttcaatggcgatatcgggatcgcgctacccggcgcgggcggcgcgctgcgc
gtctatttccggaccgcggacggcggtctgcgcgcggtgtcgccggccgcgctgccgccg
cacgacactgcctttgcgctgaccgtgcacaagtcacaaggctcggagttcgagcatgcg
gtgttgatgctgccgtccacgttcagcagggtgttgtcgcgcgagctggtttatacggcg
atcacccgcgctcgcgagcgcgtcgaagtgattggcgctagcgcggtgctggctcaggcc
atcgccacgccgacacagcgagactccggccttgctgcgagaatcgaggaggcgtcgcgc
ggccgttag
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