Paraburkholderia caledonica: CUJ87_11860
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Entry
CUJ87_11860 CDS
T05740
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
pcj
Paraburkholderia caledonica
Pathway
pcj03420
Nucleotide excision repair
pcj03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pcj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CUJ87_11860
03430 Mismatch repair
CUJ87_11860
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pcj03400
]
CUJ87_11860
Enzymes [BR:
pcj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CUJ87_11860
DNA repair and recombination proteins [BR:
pcj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CUJ87_11860
MMR (mismatch excision repair)
Other MMR factors
CUJ87_11860
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_12
PcrA_UvrD_tudor
AAA_30
Viral_helicase1
DUF8203
Motif
Other DBs
NCBI-ProteinID:
AXF15019
UniProt:
A0ABU1L336
LinkDB
All DBs
Position
PHRS4_A:complement(2709217..2711580)
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AA seq
787 aa
AA seq
DB search
MPDLLANLNPEQHAAVTLPNEPALILAGAGSGKTRVLITRIAWLIQHGLASPATILAVTF
TNKAAREMMSRLSALLPIDTRGMWIGTFHGLCNRMLRAHHRDAGLPATFQILDTADQLSA
IKRLMKGLNIDDEKYPAKNLQYFINNAKEQGLRPKDVDATDNFNRKFVELYEAYDQQCQR
EGVVDFPELLLRCYELLAHNPPLRAHYQARFKHILVDEFQDTNKLQYAWLKLLAGQTNSI
FAVGDDDQSIYAFRGANVGNMRDFEHEFNVRHLIKLEQNYRSHGHILDAANQLIANNSRR
LGKNLRTDAGHGEPVRVYESATDSQEAGWIVEEIKALISTGTSRSEIAILYRSNAQSRTI
EHTLVNAGIAYRVYGGLRFFERQEVKHALAYLRLIDNPNDDTAFARVVNFPTRGIGARSI
EQLADAARLYNCSMAAAIPYVAGKAGSSLASFANLIGKMRAETQQMSLPETVEYVVRASG
LADFYQNEREGQDRLENLQELVNAAAAFVSEEGYGMDTPARSIPLRPGATAAPELAVATD
DPNTVVLDAPGIADPAQNPDTMTPLAGFLSHASLEAGDNQAQAGQEAVQLMTVHAAKGLE
FTAVFITGLEEGLFPHENSAMESDGLEEERRLMYVAITRAKERLYLSFAQSRMLHGQTRY
NIRSRFFDELPQETLKWLTPKVEAGARWGGRSDNAGYGRDWFARPDRQQGYGGGASTAAA
PLPAFANEQRAAEAGFRVGQQVFHTKFGEGTITALEGGGADAKAQVKFKRHGEKWLALAV
AKLQAVE
NT seq
2364 nt
NT seq
+upstream
nt +downstream
nt
atgcccgatctgctagccaatctcaaccccgaacaacacgccgccgtcacgctccccaac
gagcccgcgctcattctcgccggcgcgggcagcggcaaaacccgcgtgctcatcacgcgc
atcgcgtggctcatccagcacgggcttgcgtcgcccgccaccattctggccgtgaccttc
accaacaaggccgcgcgcgaaatgatgtcgcgcctgtcggcgcttttgcccatcgacacg
cgcggcatgtggatcggcacctttcacggcctgtgcaaccgcatgctgcgcgcgcatcat
cgcgacgccggcctgcccgccaccttccagattctcgacaccgccgaccagttgtccgcg
atcaagcgtctgatgaagggcctgaacatcgacgacgaaaaatacccggcaaagaacctc
cagtacttcatcaacaacgcgaaggaacaaggactgcgcccgaaagacgtcgacgccacc
gacaatttcaaccgcaaattcgtcgaactgtacgaagcgtatgaccagcagtgtcagcgc
gaaggcgtcgtcgactttccggaactgctgttgcgctgctatgaactgctcgcgcacaat
ccgccgctgcgcgcgcactatcaggcgcgcttcaaacacatcctcgtcgacgagtttcag
gacacgaacaagctgcaatacgcgtggctgaagctgctcgcgggccagaccaattcgatc
ttcgcggtcggcgacgacgaccagtcgatctacgcgttccgcggcgccaacgtcggcaac
atgcgcgacttcgagcacgagttcaatgtccggcacctgatcaagctcgaacagaattac
cgctcgcacggtcatattctcgacgcggccaatcagttgatcgcgaacaattcgcggcgt
ctcggcaagaatctgcgcaccgacgccggtcatggtgaaccggtccgtgtttatgaatcc
gcgacggattcgcaggaagccggctggatcgtcgaggagatcaaggcgctgatcagcacc
ggcacgtcgcgcagcgaaatcgcgattctctaccgcagcaatgcgcagtcgcgcacgatc
gagcacacgctcgtcaatgcgggcatcgcgtatcgcgtgtatggcggcttgcgctttttc
gagcgtcaggaagtcaagcacgcgctcgcgtatctgcgtctgatcgacaatccgaacgac
gacacagcgttcgcgcgcgtcgtcaatttccccacgcgcggcatcggcgcgcgctcgatc
gaacaactcgcggacgcggcgcgactgtataactgctcgatggccgcggcgatcccgtat
gtcgccggcaaggcgggctccagtcttgcgagcttcgcgaacctgatcggcaagatgcgc
gcggaaacgcagcagatgagcttgccggagaccgtcgagtacgtcgtccgtgcaagcggt
ctcgcggacttctatcagaacgagcgcgaaggtcaggaccggctcgagaacttgcaggaa
ctcgtcaacgcggccgccgcgttcgtcagcgaagagggctacggcatggacacgcccgcg
cgctccattccgctgcgtccgggagccaccgccgcgcccgaactggcagtcgcgaccgac
gacccgaacaccgtagtgctcgacgcgcccggcatcgccgaccccgcgcaaaacccggac
acgatgacgccgctcgccggctttctgtcgcacgcgtcgctcgaagcgggcgacaaccag
gcgcaagccggccaggaagccgtgcaactcatgacggtgcacgcggccaagggcctcgaa
ttcacggccgtgttcatcacgggtctcgaagaggggctgtttccgcatgagaacagcgca
atggagtcggacgggctcgaggaagaacgccggctgatgtacgtggccatcacgcgcgcg
aaggagcgtctgtacttgtcgttcgcgcaaagccggatgctgcacggccagacacgctac
aacattcgctcgcgtttcttcgacgaattgccgcaggagacgctcaagtggctcacgccg
aaagtcgaggcaggcgcgcgctggggcggccgctcggacaatgcgggttatgggcgagac
tggttcgcccggcccgaccgccagcagggctacggcggcggggcgtccacggcagccgcg
ccgttgccggcgttcgctaacgagcagcgcgcagcggaggcgggcttccgcgtcggccag
caggtgtttcacaccaagttcggcgaaggcacgatcactgcgttggaaggcggcggggcc
gacgcgaaggcgcaagtcaagttcaagcgccacggcgagaagtggctcgcgctcgcggtc
gcgaaactgcaggcggtcgaatga
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