Paraburkholderia caledonica: CUJ87_14810
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Entry
CUJ87_14810 CDS
T05740
Name
(GenBank) ribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
pcj
Paraburkholderia caledonica
Brite
KEGG Orthology (KO) [BR:
pcj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pcj03016
]
CUJ87_14810
Enzymes [BR:
pcj01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
CUJ87_14810
Transfer RNA biogenesis [BR:
pcj03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
CUJ87_14810
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
MetJ
Motif
Other DBs
NCBI-ProteinID:
AXF15515
LinkDB
All DBs
Position
PHRS4_A:complement(3338323..3340470)
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AA seq
715 aa
AA seq
DB search
MNVFFEESGSFKAGSVLSRQGDAFQVELPGGRRAKVRAKDVLIEFEKPGAAELMQQADAV
AQEIDLDFLWECAPDDEFPFATLGAEYFGERFGPVERAALVLRMHGAPVYFRRKGRGMYQ
RAPQEQLKMALAGLERKRQQALVQQGYEEELKAGRLPEAFTGKTALALLTRPDKNTIEYK
ALEAAAAARGISQARLMLECGAIPSARALHEAKFLSEFFPHGTGFPPVTPGSVPEDLPEA
NVQAFSIDDITTTEIDDAFSVEHLADGRVRIGVHIAAPALGIQRGDEVDAIARTRLSTVY
MPGDKITMLPDSVVDAFTLAEGGLRPALSLYVIVNRETQEIVASETRAERVFVKNNLRHN
TLDELVTEEALAAGTGDYPHKEDIAVLWPFAQALFEKRQAARAGYGLRREVQRNTDFNFY
VEGEHITITPRRRGSPLDTIVAELAILANSSWGAFLHDHGVPGIYRTQRAFGAPTGPKRT
RMQTNAAPHEGLGVTQYAWSTSPLRRYVDLVNQWQLLACVQHGVTAKLAAPFKPKDADLF
AVVQGFDDTYSAYADHQRRMEYFWCLRWLKQENRKQVVASVVKGDLVRLEEIPLLLHVPG
LGVHARGTRLQMEVMSIDELTVEASVRLLHVLDAPTVTSGAEADEADDADEADEAEEGEE
EIVEASDESAESEAEAQAEADVDGAESGATSADSADNDNGSSDAAAGQRITEPGR
NT seq
2148 nt
NT seq
+upstream
nt +downstream
nt
gtgaacgttttcttcgaggaatcgggaagtttcaaggcaggcagtgtgctgtcgcgccaa
ggcgatgcgtttcaggtcgagttgccgggcggccggcgcgcgaaggtgcgcgcgaaggac
gtgctgatcgaattcgagaagccgggtgcggccgaactgatgcagcaggccgacgccgtt
gctcaggagatcgacctggacttcctgtgggaatgcgcgcccgacgacgaatttccgttc
gccaccctcggcgcggaatatttcggcgagcgcttcggcccggtcgagcgcgcggcgctg
gtgctgcgcatgcatggcgcgccggtgtatttccgccgtaagggccgcggcatgtatcaa
cgcgcgccgcaggagcagttgaaaatggcgctcgcgggcctcgagcgtaagcgtcagcag
gcgctcgtgcagcaaggctacgaagaggaactgaaggccggccgcttgccggaggcgttc
accggcaagacggcgctcgcgttgctcaccaggcccgacaagaacacgatcgaatacaag
gcgctcgaagccgccgcggctgcgcgcggcatttcgcaagcgcgtctcatgctcgaatgc
ggcgccattccctcggcgcgagctttgcacgaggccaaattcctctcggagtttttcccg
cacggcaccggtttcccgcctgtcacgcccggcagcgtgcccgaggatctgcccgaagcg
aacgtgcaggcgttctccatcgacgacattacgaccactgagatcgacgacgcgttttcc
gtcgagcatctcgcggacggccgcgtgcggatcggcgtgcacatcgcggcgccggcgctc
ggcattcaacgcggcgacgaggtggacgccatcgcgcgcacgcgtttgtcgaccgtgtac
atgcctggcgacaagatcacgatgctgcccgatagcgtggtggacgcgttcacgctcgcc
gaaggcggcttgcgtccggcgctttcactgtatgtgatcgtcaaccgtgagacgcaggag
atcgtggcgagcgaaacgcgtgcggagcgcgtgttcgtgaagaacaatctgcgccacaac
acgctcgacgaactggtcaccgaagaggcgctcgctgcgggcacgggcgactatccgcac
aaggaagatatcgccgttttgtggccgttcgcgcaggcgctgttcgagaagcgtcaggct
gcgcgcgcgggttatggtctgcgccgcgaggtgcagaggaatactgacttcaacttttac
gtcgaaggcgagcacatcacgatcacgccgcggcggcgcggttcgccgctcgacacgatc
gtcgccgaactggcgatcctggcaaattcgtcatggggcgcgtttctgcacgaccacggc
gtgccgggcatctatcgcacacagcgcgcgttcggcgcacccactggccccaagcgcacc
cgcatgcagacgaacgccgcgccgcacgaagggctcggcgtcacgcaatatgcgtggagc
acgtcgccgctgcgccgttacgtcgacctggtgaaccagtggcagttgctcgcttgtgta
caacacggcgtaaccgcgaagctggccgccccgttcaagcccaaagatgccgacctgttc
gccgtcgtgcaaggtttcgacgacacgtacagcgcgtacgccgatcatcagcgccgcatg
gaatatttctggtgtctgcgctggctgaagcaggaaaaccgcaagcaggtggtggcgtcc
gtcgtgaagggcgacctcgtgcggctcgaagagattccgctgctgctgcatgtgccgggg
ctcggcgtgcatgcgcgcggcacgcgtcttcagatggaggtgatgtcgatcgacgagttg
accgtcgaggcgtccgtgcgtcttctgcatgtgctcgacgcgccgactgtcacgagcggc
gccgaagctgatgaggccgacgacgcagacgaagcagacgaagcagaagagggcgaagag
gagatcgtcgaagcgtccgatgaaagcgccgaaagcgaagccgaggcgcaagcggaagcc
gatgtcgacggtgcggaaagcggcgcaacctcggcggacagcgccgataacgacaatggc
tcaagcgatgccgccgccgggcagcgcatcacggaaccgggtcgatga
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