Paraburkholderia caledonica: CUJ87_18165
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Entry
CUJ87_18165 CDS
T05740
Name
(GenBank) recombinase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pcj
Paraburkholderia caledonica
Pathway
pcj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CUJ87_18165
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcj03019
]
CUJ87_18165
03400 DNA repair and recombination proteins [BR:
pcj03400
]
CUJ87_18165
Enzymes [BR:
pcj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CUJ87_18165
Messenger RNA biogenesis [BR:
pcj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CUJ87_18165
DNA repair and recombination proteins [BR:
pcj03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
CUJ87_18165
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
Cas3-like_C_2
PreAtp-grasp
DUF4350
TetR_C_30
Phage_Gene47
Motif
Other DBs
NCBI-ProteinID:
AXF16404
LinkDB
All DBs
Position
PHRS4_B:191061..192806
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AA seq
581 aa
AA seq
DB search
MTVDQRLRSMRKTMRDMFGIVRLRAGQEDIIRSVLQHHDTLATMPTGAGKSLCYQLPALH
LEGTTLVVSPLIALMKDQADKLLAAGIDCTLVNSTLRSRAEREALERIAAGESGIVFVTP
ERLAQPAFIETLRARTENRVGLVVVDEAHCVSQWGHDFRPAFLQIAAAVKSLGQPPVLAL
TATATPRVLDDIVHSLALREPRVVRTGTYRQNLRYRVVQVSTAGGKDGAARAVTAKREQL
SKLIASLSGTGIVYAATVRDVDRIYGWLTEAGESVSRYHGRMAADAREEAQEQFMSGATR
LMIATNAFGMGIDKADIRFVIHYQIPGSLDAYYQETGRAGRDGEPADCVLLFDLNDRRIQ
QFFLAGRYPSVELAQRVYDTLAARIADEPKGVTLAALKQALPDVGAGKLEVALNMLVDAR
VAGRDRQRRYRLRSREGAQESARDAVANAAAQFEQMSSHDRETLQQMIDYAQTGQCRWRA
ILDYYGDSPAAERCGVCDNCVNPPQIDMAPDAIVAPETHGNEVAQRKREPRKVRVWTPGD
AVRVPRYGAGEVALASGEQVAVQFPDGSTRTFLASYVRAGR
NT seq
1746 nt
NT seq
+upstream
nt +downstream
nt
atgacagtcgaccaacggcttcgcagcatgcgcaagaccatgcgtgacatgttcggtatc
gtgcgcttgcgcgccggtcaggaggacattatccgcagcgtattgcaacaccacgacacg
cttgccacgatgccgaccggcgcgggcaagtcgctttgctatcagttgccggcgctgcat
ctcgaaggcaccacgctcgtcgtgtcgccgctgatcgcgcttatgaaagaccaggccgac
aagctgcttgccgctggaatcgactgcacactcgtgaacagcacactgcgtagtcgcgcc
gagcgcgaagcgctggagcggattgcggcaggcgagagcggcatcgtgttcgtgacgccg
gagcgccttgcgcaaccggccttcatcgagacgttgcgcgcgcgcaccgaaaaccgcgta
ggactagtggtggtcgacgaggcgcactgcgtatcgcaatggggacacgactttcgcccc
gcgttcctgcagatcgcggctgcggtaaagtcgctggggcagccgccggtgcttgcgttg
actgccaccgcgacgccacgcgtgctcgacgacatcgtgcactcgcttgcattgcgcgaa
ccgcgtgtggttcgcacgggcacgtatcgccagaatctgcgctatcgcgtcgtgcaggtc
agcacggcgggaggcaaggacggcgcagcgcgcgcggtgaccgccaagcgcgagcaattg
tcgaagctgattgcatcgcttagcggaaccggcatcgtctacgcggcgactgtgcgcgac
gtcgatcgcatttacggctggctcacggaggcaggcgagtcggtctcgcgctatcacggt
cgaatggcggctgacgctcgcgaagaggcgcaggagcagttcatgtcgggcgccacccgt
ttgatgatcgcgaccaacgcgtttggcatgggcatcgacaaggcggacatacgcttcgtg
atccattaccagattcccggcagcctcgacgcttactatcaggaaacgggacgcgcgggc
cgtgacggcgaacccgccgattgcgtgctgctgttcgatctgaacgaccggcgcattcag
caattcttccttgcgggacgctatccgagcgtcgagctcgcgcagcgggtctacgacacg
cttgccgcgcgtattgccgacgaaccgaagggcgtcacgctggccgcgctcaagcaggca
ttgccggatgtcggtgcgggcaagctggaagtcgcgttgaacatgctggtcgacgcccgc
gtggccggccgcgaccggcagcgccgctatcgtctgcgaagccgcgagggcgcgcaggag
tccgcgcgcgacgcggttgccaatgccgcggcgcaattcgaacagatgagctcgcacgac
agggaaacgctgcagcagatgatcgactacgcgcaaacgggtcaatgccggtggcgcgcg
atcctcgactattacggcgactcgcctgccgccgagcgctgcggcgtctgcgacaactgc
gtgaatccgccgcaaatcgacatggcgcccgacgctatcgttgcaccggagacgcacggg
aatgaagtcgcacaacgcaagcgtgagccgcgcaaagtacgcgtctggactccgggcgat
gccgtgcgcgtgccgcgctatggcgccggtgaggtcgcgctggcgagcggcgagcaggtg
gccgtgcagttccccgacggcagcacccgcacgtttctggcgagttacgtgagggcgggg
cgctga
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