Paraburkholderia caledonica: CUJ87_26900
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Entry
CUJ87_26900 CDS
T05740
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
pcj
Paraburkholderia caledonica
Pathway
pcj03030
DNA replication
pcj03410
Base excision repair
pcj03420
Nucleotide excision repair
pcj03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pcj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CUJ87_26900
03410 Base excision repair
CUJ87_26900
03420 Nucleotide excision repair
CUJ87_26900
03440 Homologous recombination
CUJ87_26900
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pcj03032
]
CUJ87_26900
03400 DNA repair and recombination proteins [BR:
pcj03400
]
CUJ87_26900
Enzymes [BR:
pcj01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
CUJ87_26900
DNA replication proteins [BR:
pcj03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CUJ87_26900
DNA repair and recombination proteins [BR:
pcj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
CUJ87_26900
NER (nucleotide excision repair)
GGR (global genome repair) factors
CUJ87_26900
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
Motif
Other DBs
NCBI-ProteinID:
AXF17833
LinkDB
All DBs
Position
PHRS4_B:complement(2088882..2091623)
Genome browser
AA seq
913 aa
AA seq
DB search
MPEERSLEGKTLLLVDGSSYLYRAYHAMPDLRGPDGGPTGALYGMINMLRRMRKEVTAEY
SACVFDAKGKTFRDDWYPDYKANRPSMPDDLSRQIEPIHVAVRALGWPLLMIDGVEADDV
IGTLCTEAEKRGMNVIVSTGDKDLAQLVSDHVTLINTMTNEKLDRAGVLAKFGVPPERIV
DYLSLIGDTVDNVPGVEKCGPKTALKWLSQFESLDGIVAHADEIKGAVGDNLRRALDFLP
MARKLVTVERHCDLTEHLTSIEENLQSRPESREELRDVFTRHGFKTWLREVEIADAVEGP
ETDVPPALSVDHERHYETVQTWEQFDAWLQKINAAELTSFDTETTSLDPMTAQIVGLSLS
VEAGHAAYVPLAHRGPDAPVQLPRDEVLARLKPWLESAEHKKVGQHLKYDEQVLANYGIE
MRGVEHDTLLQSYVLESHRPHDMDNLALRHLGIKTIKYEDVAGKGAQQIGFDEVALDKAA
EYAAEDADVTLRLHQALHPQLAAEEALEHVYRDIEMPTSRVLRKMERTGVLIDAEKLRQQ
SSEIAARLIQLESEAYVLAGGEFNLGSPKQIGQIFFERLELPVVKKTPSGAPSTDEEVLQ
KLAEDYPLPKILLEHRGLSKLKSTYTDKLPRMVNATTGRVHTNYAQAVAVTGRLASNDPN
LQNIPVRTVEGRRIREAFIAPPGHKLVSADYSQIELRIMAHISGDESLLRAFSQGEDIHR
ATAAEIFSVTPLEVSNDQRRVAKVINFGLIYGMSSFGLASNLGITRDAAKLYIDRYFARY
PGVARYMDETRLSAKAKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQGTAADL
IKLSMIAVQKWIEQSRIGTRMIMQVHDELILEVPDAELSEVRQRLPEFMCGVAALKVPLV
AEVGAGLNWEEAH
NT seq
2742 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaagaacgaagccttgaaggtaagaccctgctattggtcgacggttcgagttat
ctgtaccgggcctaccatgcgatgcctgatctgcgcgggcccgatggtggtcccacaggt
gcgctctacgggatgatcaacatgctgcggcgcatgcgcaaggaagtcacagcagagtat
agcgcgtgcgtgttcgacgccaagggcaaaacgtttcgcgacgactggtatcccgactat
aaggcgaatcgtccatccatgccggacgatctctcgcggcagatcgagccaattcatgtg
gccgtgcgtgcactcggctggccgcttctgatgatcgacggcgtggaagccgacgacgtg
atcggcacgctttgcaccgaggcggaaaagcgtggcatgaacgtgatcgtgtcgactggg
gacaaggatctggcgcagctcgtgtcggatcatgtcaccctcatcaatacgatgaccaac
gaaaaactcgaccgcgccggcgttcttgcgaagttcggcgtccccccggagcgcattgtc
gactacctgtcgttgatcggcgataccgtcgacaacgtgcccggcgtcgagaaatgcggg
ccgaaaaccgcgctcaaatggctgtcgcaattcgagtcgctagatggcatcgtcgcacat
gcagacgagatcaaaggtgcggtaggagacaatctgcgacgtgctctggattttctgccg
atggcgcgcaagctcgtcaccgtggagcgtcactgcgatctgaccgagcatctcacgtcg
atcgaggagaatttgcagagccggcccgaatcgcgcgaagaattgcgcgatgtcttcacg
cgtcacgggttcaagacctggctgcgcgaggtcgaaattgccgatgcggtcgaagggccg
gaaaccgacgtgccgcccgcgctcagcgtcgatcacgagcgccactacgaaaccgtgcaa
acgtgggaacagttcgacgcgtggctgcaaaaaatcaacgcagctgaactgacctcgttc
gacaccgaaaccacgtcgctcgatccgatgaccgcgcaaatcgtgggcctgtccctgtcg
gtagaagcgggtcatgcggcttatgtgccgctcgcgcatcgcggccccgacgcgcccgtg
caactgccgcgcgacgaagtgcttgcgaggctcaagccgtggctcgaaagcgcggagcac
aagaaggtcggtcagcatctgaagtacgacgagcaggtgctggccaattacggtatcgag
atgcgcggcgtcgaacacgacacgctgttgcaatcgtacgtgctggagtcgcatcgtccg
catgacatggacaacctcgcgttgcgccacctcggcatcaaaacgatcaagtacgaagac
gtcgcgggcaagggtgcccagcaaatcggtttcgacgaagtcgcgctggacaaagccgcc
gaatatgccgcagaagacgccgacgtaacgttgcgtctgcatcaggcactgcatccgcag
cttgctgcggaagaggcgctcgagcatgtctatcgcgacatcgaaatgcccacgtcgcgc
gtgttgcgcaagatggagcgtaccggcgttctgatcgacgcggaaaaactgcgtcagcag
agcagcgaaatcgccgcgcgtctgattcagctggagagcgaggcgtatgtgctcgccggc
ggcgaattcaatcttggctcgccgaagcagatcggtcagatcttcttcgagagactcgaa
ttgccggtcgtgaagaagacgccgagcggtgcgccgtccaccgacgaagaagtacttcag
aagctcgcagaagattatccgctgcctaaaatcctgctggaacaccgcggcttgtcgaag
cttaagtcgacctacaccgacaagctgccgcgcatggtcaacgcaacaaccggtcgcgtg
cacacgaattacgcgcaggccgttgcggtcacgggccgccttgcgtcgaacgatccgaac
ctgcagaacattccggtgcgcaccgtcgaaggccgccgtattcgcgaggccttcattgcg
ccaccggggcacaagctcgtctcagcggattactcgcaaatcgaactgcgcatcatggcg
cacatttccggcgacgaatcgttgctgcgcgcgttctcgcaaggagaagacattcaccgc
gcgacggcggccgagattttcagcgtgaccccgctcgaagtgtcgaacgatcagcggcgc
gtggcgaaggtcatcaacttcggtctgatctatggcatgagttcgttcggcctcgcgtcg
aacctgggcattacgcgcgacgccgcgaagctctatatcgaccgctatttcgcgcgctat
ccgggcgtcgctcgctatatggacgaaacgcgtctgagcgcgaaggcgaagggttatgtc
gaaacggtgttcggccgccggctgtggttgccggaaatcaacggcggcaatggtccgcgc
cgccaggccgcggagcgcgcggccattaacgcgccaatgcaaggtacggctgccgatctg
atcaagttgtcgatgatcgcggtgcagaaatggatcgaacaatccaggatcggcacccgc
atgatcatgcaggtccacgacgaactgattctcgaagtgccggacgccgaactgtctgaa
gtgcgccagcgtctgcccgagtttatgtgcggcgtcgccgcgctgaaagtcccgctggtc
gctgaagtgggcgcgggactcaactgggaggaagcgcattga
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