Candidatus Pantoea carbekii US: BMSBPS_0004
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Entry
BMSBPS_0004 CDS
T03853
Name
(GenBank) tRNA pseudouridine synthase B
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
pck
Candidatus Pantoea carbekii US
Brite
KEGG Orthology (KO) [BR:
pck00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pck03016
]
BMSBPS_0004
Enzymes [BR:
pck01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
BMSBPS_0004
Transfer RNA biogenesis [BR:
pck03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
BMSBPS_0004
Prokaryotic type
BMSBPS_0004
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
Motif
Other DBs
NCBI-ProteinID:
AKC31837
UniProt:
U3U7H0
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All DBs
Position
4608..5438
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AA seq
276 aa
AA seq
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MIDPHSNSHKIHGILLIDKQQGVSSNTVLQKVKRLFNIRKAGHTGALDPLATGMLPICLG
DATKFSQYLINSDKRYRVIARLGESTDTFDADGSIINTRFVAVTQNKLKIALESFRGSIL
QVPPMFSALKYRGRPLYEYARKQIKVERAARPIFIYELLLIRWKSNELELEIHCSKGTYI
RSIIDDLGEKLGCGAHVTMLRRLQVSHYTTEKMVTLKKLQELVHNANIHSISSLIVLNPF
LLPMDSLVANCPEIHLQKSLPKDSRANSSRDGSVNC
NT seq
831 nt
NT seq
+upstream
nt +downstream
nt
gtgattgatcctcatagtaacagtcataaaatccatggtatattattaatagacaaacag
caaggtgtttcgtctaatactgttttacaaaaagtaaaacgtttgtttaatattagaaaa
gccggtcacacaggcgcactggatccattggcgactggcatgttaccaatttgtttgggg
gacgctacaaaattttcccaatatcttattaattcagataaacgttaccgtgttatcgct
cgcctgggagaaagcactgatacttttgatgctgatggtagtataatcaatacacgtttt
gttgcagtgactcaaaataaattgaaaatagctttagaaagttttcgtggtagtatatta
caggtcccaccgatgttttcagcacttaaatatcgcgggcgtccattgtatgaatatgca
cgtaaacaaataaaagtagaacgtgcagcacgtccgatttttatatatgaactattatta
attcgatggaaatctaatgaattagaattagaaatccattgttctaagggaacttatatt
cgtagtattattgatgatttaggtgaaaagctaggttgtggagctcacgtcactatgcta
cgccgtttacaagtatctcattacacaacggaaaaaatggttacattaaaaaagttacaa
gagttggttcataacgctaatattcattcaatttcatctttaattgtactaaatccattt
ctgcttcctatggatagtttagttgcaaactgtccagaaatacatttacagaagagttta
ccaaaggacagtagagcaaatagcagcagagatggctctgtaaattgttaa
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