Candidatus Pantoea carbekii US: BMSBPS_0007
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Entry
BMSBPS_0007 CDS
T03853
Name
(GenBank) polyribonucleotide nucleotidyltransferase Pnp
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
pck
Candidatus Pantoea carbekii US
Pathway
pck03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pck00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BMSBPS_0007
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pck03019
]
BMSBPS_0007
03016 Transfer RNA biogenesis [BR:
pck03016
]
BMSBPS_0007
Enzymes [BR:
pck01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
BMSBPS_0007
Messenger RNA biogenesis [BR:
pck03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
BMSBPS_0007
Transfer RNA biogenesis [BR:
pck03016
]
Prokaryotic type
tRNA degradation factors
BMSBPS_0007
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
RNase_PH_C
S1
KH_1
KH_2
S1_2
Spt6_S1
OB_RRP5_4th
Motif
Other DBs
NCBI-ProteinID:
AKC31839
UniProt:
U3U7S4
LinkDB
All DBs
Position
6178..8328
Genome browser
AA seq
716 aa
AA seq
DB search
MLNSILRTFQYGQHTVTLETGIMARQATASVMASMDDTAVFVTIVVQKKTKPSQDFFPLM
VNYQERAYAAGRIPGNFFRREGRPNEGEILIARLIDRPVRPLFPEGFMNEVQIIATVVSV
NPQVNPDIIAMIGVSSALSISGIPFNGPFGSARVGYINNQYVLNPIADELKQSRLDLVVA
GTQNAVLMVESEADLLTEDQMLDAIVFGHSQQQVVIENIKEFVKQIDKPQWNWQPEVITN
NDLNMRVAMLAEARISKAYRITNKKERSMQLELIKNDTISSFSAEDETVDDIKITNIIHK
LEKKVVRSRILKGEPRIDGREKDMIRSLDIRTGVLPRTHGSSLFTRGETQALVIATLGSP
RDAQTIDELMGERSDGFLVHYNFPPYSVGETGVISSPKRREIGHGRLVKRSIFPVMPKQE
EFQYTVRLVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGETFVVLS
DILSDEDHLGDMDFKVAGSRDGLTALQMDIKIPGITREIMQIALHQARGARLHLLSVMDK
AISIPRQEISEFAPQIYTIKINPNKIKDVIGKGGSVIRALTEETNSIIEIEDDGTVKIVA
NNKIKAHDAIHRIEEITSDIEVGRIHSGKVTRIVDFGAFVMIANGKEGLVHISQIARKRI
DKVTDYLKMGQQVLVKVMEVDRQGRVRLSIKEATDPMKMETIIASSNMVDSLEVKQ
NT seq
2151 nt
NT seq
+upstream
nt +downstream
nt
ttgttgaattcgatcttgcgtacatttcaatatggtcagcatactgtcacgctggaaact
ggtataatggcacgtcaagccacggcttctgtaatggctagtatggacgatacagcagtt
tttgtgacaattgttgttcagaaaaagacaaaaccaagccaagattttttcccattaatg
gttaactatcaagaacgtgcctatgctgctggtcgtattccaggtaatttttttcgtcgt
gaaggccgtcctaatgaaggtgaaattttgattgcacggctgattgatcgacctgttcgt
cccctttttcctgaaggtttcatgaatgaagttcaaattattgctactgtagtatctgta
aaccctcaggtgaatccggatatcattgcgatgattggtgtgtctagtgcattgtcaata
tcaggcatcccatttaatggtccttttggttcagctcgtgtaggatacatcaataatcaa
tatgtactgaatccgattgctgatgaacttaaacaatctcgcttagatttagtggttgct
ggtacacagaatgcggtcttgatggtagaatcagaagctgatttacttacagaagatcaa
atgttagatgctatagtttttggtcattcacagcagcaagttgttattgaaaatattaag
gaatttgtaaagcaaattgataaaccacaatggaactggcagcccgaagtaattactaac
aatgatcttaatatgcgtgttgctatgttagctgaagcacgcattagtaaggcttatcgc
attactaataaaaaagaacgttctatgcagcttgaattaattaaaaatgacactatttcg
tcattttcagcggaagatgaaacagtagatgatatcaaaattactaacataatacataaa
ttagaaaaaaaggtagttcgttctcgcattttaaagggtgagccacgcattgatggtcga
gaaaaagatatgattcgtagtcttgatatacgaactggcgtgttacctcgtacacatggt
tcttctctttttactcgtggtgaaacacaggcattagttattgctactttaggtagtccg
cgtgatgctcaaactatagacgagttaatgggtgaacgtagtgatggattccttgtacat
tacaattttcctccatactctgtaggtgaaacaggtgtgattagctcaccaaagcgtcgt
gaaatcggacatggtcgtttagttaaacgtagcatttttccagtcatgccaaaacaggaa
gaatttcagtatactgtgcgtctagtatctgaaattactgaatctaatggttcttcttct
atggcgtctgtttgtggcgcttctctagcattaatggatgcaggtgtacctattaaagct
gctgtagcaggcattgctatgggattagtaaaagaaggggagacatttgtagtactatct
gatattcttagcgacgaggatcatcttggtgatatggattttaaagtggctggtagtcgt
gacggtctcactgcattacagatggatattaaaattccgggtatcactcgtgaaatcatg
caaatcgctcttcatcaagctaggggtgcccgtttacatcttctgagtgtaatggataaa
gcaattagtattccacgtcaagaaatctcagaatttgcaccacaaatctatactataaag
attaatcctaataagattaaagacgttataggcaagggtggttctgttattcgagctttg
actgaagaaacgaatagtatcattgaaattgaagatgatggcaccgtaaaaattgtagcg
aataataaaataaaggcacacgatgctatacatcgaattgaagaaattacttcagatatt
gaagtaggtcgtattcattctggtaaggttacacgcatagttgatttcggtgcctttgta
atgatagctaacggcaaagaaggtttagttcatatttcacaaattgctagaaaacgtatt
gataaagttacagattatttaaaaatgggccagcaagtactagtaaaagtaatggaggtg
gaccgccaaggacgtgttcgtcttagcattaaagaagcaacagatccaatgaaaatggag
acaattattgcttcatccaatatggtcgactcattggaagtaaaacagtaa
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