Candidatus Pantoea carbekii US: BMSBPS_0008
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Entry
BMSBPS_0008 CDS
T03853
Name
(GenBank) cold-shock DEAD box protein A DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pck
Candidatus Pantoea carbekii US
Pathway
pck03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pck00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BMSBPS_0008
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pck03019
]
BMSBPS_0008
03009 Ribosome biogenesis [BR:
pck03009
]
BMSBPS_0008
Enzymes [BR:
pck01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BMSBPS_0008
Messenger RNA biogenesis [BR:
pck03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BMSBPS_0008
Ribosome biogenesis [BR:
pck03009
]
Prokaryotic type
rRNA helicases
BMSBPS_0008
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
DUF4180
Cas3-like_C_2
DRTGG
Motif
Other DBs
NCBI-ProteinID:
AKC31840
UniProt:
U3U618
LinkDB
All DBs
Position
8870..10642
Genome browser
AA seq
590 aa
AA seq
DB search
MVDVKISFVDLGLKESIISALKDMGYLKPSPIQLECIPYLLSGRDVLGMAQTGSGKTAAF
SLPLMNNIDVSIKAPQILILVPTRELAIQLAEACRKFSKYIQGLKVLAIYGGQRYDIQLR
SLRQGPQIIVGTPGRLLDHLKRNTLDLSNLCGVVLDEADEMLRMGFIEDVESIMTKMPAE
HQTALFSATMPEVIRRITKRFMNDPYEVRIQSNSTTDPNISQYYWTAYGSKKDALVRFLE
TEKFDAAIIFVRTQNATLEVNEVLERNGFNSAALNGDMNQTLREQTVTRLKDGRIDILIA
TDVAARGLDVERISLVINYDIPIDAQSYIHRIGRTGRAGRTGRALSFVENRERRLLRNIE
YIMKLTIPEVELPNAELLCQLRLEHFTAKIQKQLVSDDLHLYGELLKKIQLQGHLQDIEI
LAAALMKIAQQNRPLILPPDIPRSQHREFYHRNKKRQNSSGMRSVTRTRYAARQNRRERH
DVSEMQLYRLEVGRNDGVEVRHIVGAIANEGDINSRYIGHIRLFSTHSTIELSKGISGEV
LQNFTHTRILNKQMNIKLIGDVPQYTKNERRNRKHDSEQRRLGRRSWRNS
NT seq
1773 nt
NT seq
+upstream
nt +downstream
nt
atggttgatgtaaaaattagttttgttgatttaggtcttaaagaatccattatatcagct
ctaaaggatatgggatatttaaaaccttctccaattcagcttgaatgtattccatacctg
ctttctggacgcgatgttcttggcatggcacagactgggagtggtaaaacagctgctttt
tctttaccgttaatgaataatattgatgtttctattaaagcaccacagattcttatatta
gtaccaactcgtgagttagcaatacaattagcagaagcctgtagaaaattttctaaatat
attcaagggcttaaagtattagctatatatggtggtcaacgttatgatatacagttacgt
tcattacgtcagggaccacaaattattgtaggtacgccgggtcgtttacttgatcatctt
aaacgcaatacattagacctttcgaatttgtgtggagtagtattagatgaagctgatgaa
atgcttcgcatgggatttatagaagatgttgaaagtattatgacaaaaatgcccgcagaa
catcagacggctttgttctccgctacaatgcctgaagttattcgccgtataactaaacgt
tttatgaacgatccatatgaagtacgcattcaatcaaatagtactactgatccaaatatt
tcacagtattactggacggcatacggttctaaaaaagacgctttggtacgttttttagaa
acagaaaaatttgatgctgctataatctttgtgcgtacacagaatgcaacattagaagtt
aatgaagtgttagagcgtaatgggttcaacagtgctgcattaaacggtgatatgaatcaa
acgctacgtgaacagacagtgacgcgtttaaaagatggacggattgatatccttatagct
actgatgtagcggctcgtgggttagatgtagaacgtattagtttagttatcaattatgat
attccaatagatgcacaatcttatattcatcgaattggacgtacaggccgtgctggtcgt
actggtcgtgcactctcgtttgttgaaaatcgtgagcggcgtttactacgtaatattgaa
tatattatgaaattaactattccagaagtcgaattaccaaatgcagaactattatgtcaa
cttcgtttagaacactttacagctaaaattcaaaaacagttagtaagtgatgatttgcat
ttgtatggtgaacttttaaaaaaaattcaattacaaggacatttgcaagatatagaaatt
ttagccgctgcactaatgaaaatagcacaacagaatcgtccgcttattttaccacctgat
ataccacgttcgcaacatcgtgaattttatcatcgtaacaaaaaacgtcaaaattcatct
ggtatgcgtagtgttacacgtacacgttatgctgctcgtcagaatcgtcgagaacgtcat
gatgtttctgaaatgcagttatatcgcttagaagtaggccgtaacgatggagtagaagta
cgccatattgtgggtgcaattgctaatgaaggtgacattaatagccgttatattggtcat
attagattatttagtacacattctaccattgagctaagtaaaggtatttctggagaagtt
ttacagaattttactcatacacgtattcttaataaacaaatgaatataaaattaataggt
gatgtgccacaatatacaaaaaatgaacggcgaaaccgtaaacatgacagtgaacaacga
cgtttaggacgacgatcatggaggaattcataa
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