| Entry |
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| Name |
(GenBank) cold-shock DEAD box protein A DeaD
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| KO |
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| Organism |
pck Candidatus Pantoea carbekii US
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| Pathway |
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| Brite |
KEGG Orthology (KO) [BR:pck00001]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BMSBPS_0008
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:pck03019]
BMSBPS_0008
03009 Ribosome biogenesis [BR:pck03009]
BMSBPS_0008
Enzymes [BR:pck01000]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BMSBPS_0008
Messenger RNA biogenesis [BR:pck03019]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BMSBPS_0008
Ribosome biogenesis [BR:pck03009]
Prokaryotic type
rRNA helicases
BMSBPS_0008
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| SSDB |
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| Motif |
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| Other DBs |
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| LinkDB |
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| Position |
8870..10642
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| AA seq |
590 aa
MVDVKISFVDLGLKESIISALKDMGYLKPSPIQLECIPYLLSGRDVLGMAQTGSGKTAAF
SLPLMNNIDVSIKAPQILILVPTRELAIQLAEACRKFSKYIQGLKVLAIYGGQRYDIQLR
SLRQGPQIIVGTPGRLLDHLKRNTLDLSNLCGVVLDEADEMLRMGFIEDVESIMTKMPAE
HQTALFSATMPEVIRRITKRFMNDPYEVRIQSNSTTDPNISQYYWTAYGSKKDALVRFLE
TEKFDAAIIFVRTQNATLEVNEVLERNGFNSAALNGDMNQTLREQTVTRLKDGRIDILIA
TDVAARGLDVERISLVINYDIPIDAQSYIHRIGRTGRAGRTGRALSFVENRERRLLRNIE
YIMKLTIPEVELPNAELLCQLRLEHFTAKIQKQLVSDDLHLYGELLKKIQLQGHLQDIEI
LAAALMKIAQQNRPLILPPDIPRSQHREFYHRNKKRQNSSGMRSVTRTRYAARQNRRERH
DVSEMQLYRLEVGRNDGVEVRHIVGAIANEGDINSRYIGHIRLFSTHSTIELSKGISGEV
LQNFTHTRILNKQMNIKLIGDVPQYTKNERRNRKHDSEQRRLGRRSWRNS |
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| NT seq |
1773 nt +upstreamnt +downstreamnt
atggttgatgtaaaaattagttttgttgatttaggtcttaaagaatccattatatcagct
ctaaaggatatgggatatttaaaaccttctccaattcagcttgaatgtattccatacctg
ctttctggacgcgatgttcttggcatggcacagactgggagtggtaaaacagctgctttt
tctttaccgttaatgaataatattgatgtttctattaaagcaccacagattcttatatta
gtaccaactcgtgagttagcaatacaattagcagaagcctgtagaaaattttctaaatat
attcaagggcttaaagtattagctatatatggtggtcaacgttatgatatacagttacgt
tcattacgtcagggaccacaaattattgtaggtacgccgggtcgtttacttgatcatctt
aaacgcaatacattagacctttcgaatttgtgtggagtagtattagatgaagctgatgaa
atgcttcgcatgggatttatagaagatgttgaaagtattatgacaaaaatgcccgcagaa
catcagacggctttgttctccgctacaatgcctgaagttattcgccgtataactaaacgt
tttatgaacgatccatatgaagtacgcattcaatcaaatagtactactgatccaaatatt
tcacagtattactggacggcatacggttctaaaaaagacgctttggtacgttttttagaa
acagaaaaatttgatgctgctataatctttgtgcgtacacagaatgcaacattagaagtt
aatgaagtgttagagcgtaatgggttcaacagtgctgcattaaacggtgatatgaatcaa
acgctacgtgaacagacagtgacgcgtttaaaagatggacggattgatatccttatagct
actgatgtagcggctcgtgggttagatgtagaacgtattagtttagttatcaattatgat
attccaatagatgcacaatcttatattcatcgaattggacgtacaggccgtgctggtcgt
actggtcgtgcactctcgtttgttgaaaatcgtgagcggcgtttactacgtaatattgaa
tatattatgaaattaactattccagaagtcgaattaccaaatgcagaactattatgtcaa
cttcgtttagaacactttacagctaaaattcaaaaacagttagtaagtgatgatttgcat
ttgtatggtgaacttttaaaaaaaattcaattacaaggacatttgcaagatatagaaatt
ttagccgctgcactaatgaaaatagcacaacagaatcgtccgcttattttaccacctgat
ataccacgttcgcaacatcgtgaattttatcatcgtaacaaaaaacgtcaaaattcatct
ggtatgcgtagtgttacacgtacacgttatgctgctcgtcagaatcgtcgagaacgtcat
gatgtttctgaaatgcagttatatcgcttagaagtaggccgtaacgatggagtagaagta
cgccatattgtgggtgcaattgctaatgaaggtgacattaatagccgttatattggtcat
attagattatttagtacacattctaccattgagctaagtaaaggtatttctggagaagtt
ttacagaattttactcatacacgtattcttaataaacaaatgaatataaaattaataggt
gatgtgccacaatatacaaaaaatgaacggcgaaaccgtaaacatgacagtgaacaacga
cgtttaggacgacgatcatggaggaattcataa |
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