Candidatus Pantoea carbekii US: BMSBPS_0061
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Entry
BMSBPS_0061 CDS
T03853
Name
(GenBank) DNA polymerase III alpha subunit DnaE
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
pck
Candidatus Pantoea carbekii US
Pathway
pck03030
DNA replication
pck03430
Mismatch repair
pck03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pck00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BMSBPS_0061
03430 Mismatch repair
BMSBPS_0061
03440 Homologous recombination
BMSBPS_0061
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pck03032
]
BMSBPS_0061
03400 DNA repair and recombination proteins [BR:
pck03400
]
BMSBPS_0061
Enzymes [BR:
pck01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
BMSBPS_0061
DNA replication proteins [BR:
pck03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
BMSBPS_0061
DNA repair and recombination proteins [BR:
pck03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
BMSBPS_0061
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
RAD24_helical
RMI2
Motif
Other DBs
NCBI-ProteinID:
AKC31889
LinkDB
All DBs
Position
complement(82994..86473)
Genome browser
AA seq
1159 aa
AA seq
DB search
MTEPRFIHLRVHSDYSMIDGLAKTSTLVKKTASLGMPAIAITDFMNLCGLVRFYNSAHLA
GIKPIIGADFKMASTPMMDNELVQVTLLAANNIGYKHLKILISRSYQRGYGIVGPFIERD
WLIELSNGLIVLSGGRQGDVGRSLLRGNKQSVLQCLDFYLKYFSNNYYLEVTRTGRPDEE
TYLNAAVNLAISKSLPIVATNEVCFLNKDDYAAHEIRVAIHDGYMLSDPKRPIRYSAQQY
MRSEKEMCELFSDIPAALKNSVEIAKRCNATIRLGEYFLPQFPTGTVTTEDFLVIKSRKG
LEKRLEFLFPNNEIRIQQRQKYDERLKAELDVINQMGFPGYFLIVMEFIQWSKDNDIPVG
PGRGSGAGSLVAYALKITDLNPLEFDLIFERFLNPERISMPDFDIDFCMEKRDQVIDHVT
EIYGREAVAQIITFGSMTAKAVIRDVGRVLGHPYGFINRISKMIPSDPGMTLEKAFSADP
ILLQTYNADEEVKALVDMARKLEGVIRNAGKHAGGVVISPTKITDFAPLYCDEDGNHPMT
QFDKNDVEDTGLVKFDFLGLRTLTIIDYAVKMINLRLKKYDLKPLNISTISLNDQKSFEI
LQRAETTAVFQLESRGMKDLIKRLKPDCFEDIIALVALFRPGPLQSGMVDNFINRKHGRE
KIAYPDHRWQHESLKPVLQSTYGIILYQEQVIQIAQVLAGYTLGSADVLRRAMAKKKPNE
MLKQRCIFREGAKKNDIDGVLSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKSNYT
AEFMAAAMSADMDNTTKIVALVDECYRIGLNVLKPDINSGLYHFHVNDEGKIVYGIGAIK
GVGKSTIEAIIDARNQGGLFKDLFDLCIRTNIKKFNRRVLEILIISGACDALGAHRASLM
NDVQIALKIADQRMQTKTIGQIDMFGILSNSPQEIKKSRIRPWSKEVQLRGERDTLGLYL
TGHPIDQHLKEIQYYVNGTCLKDISKTEHGKITVVAGLVISARVICTKRGNRMGILTLDD
RSGYIEIILFTEVFEKYKHLVERDRILIVHGQISLNDFNQSLKISAQKIMDIDEARKKYV
HALAIFLNDSQIDEQFLKHFRKILEPYCSGNIPVHVYYQKKDAKAKLLFGTAWRISLNNS
LLNELRLLVGSQQVELEFN
NT seq
3480 nt
NT seq
+upstream
nt +downstream
nt
atgactgaacctcgttttatacatttgcgtgtacatagtgattattcaatgattgatggc
ttggcaaaaactagtactttagttaaaaaaacagcttctctgggaatgccagcaattgct
attacagattttatgaatttatgtggcttagtacgtttttataatagtgcccatttagca
ggcattaaacctattattggtgctgattttaaaatggctagcacaccgatgatggacaat
gaacttgtacaagttacgttacttgctgccaataacataggttataaacatttaaaaatt
ttaatttcaagatcttaccaacgtggatatggtattgttggtccgtttattgaaagagat
tggctaatcgagttaagtaacggattaatagtattatcaggtggtcgccaaggcgatgta
ggtcgtagtttattacgaggtaataagcaatcagtgctgcaatgtctagatttctatctt
aaatatttttctaataattattatcttgaagttacacgtactggtcgtcctgatgaagaa
acgtatttaaacgctgcagttaatttagcaatttctaaatctctaccaatagtagcaact
aatgaagtatgtttccttaataaagatgattatgctgcacatgagattcgtgttgcaatt
catgatggttatatgctctctgatccaaaacgtcctatccgatatagtgctcaacaatat
atgcgcagtgaaaaggaaatgtgtgagctattctcagatattcctgcagctctaaaaaat
agtgtagaaattgctaaacgttgtaatgctactatacgtcttggagaatattttctgccg
cagtttccaacaggaacagtaaccactgaagattttctagttataaaatcacgaaaggga
ctagaaaaacgtctggaatttttatttccaaataatgaaatacgtattcagcaacgacag
aaatatgatgagcgtttaaaagctgaactcgatgtgattaatcaaatgggttttccaggt
tattttttaatcgttatggaatttattcagtggtctaaagataatgatattccagttgga
ccaggtcgtggttctggtgcaggttctctcgtagcatatgcattaaaaataactgatctc
aatcctttagaatttgatttaattttcgaacgttttcttaatcctgaacgtatttcaatg
cctgattttgacatcgacttctgcatggaaaaacgtgatcaggtaattgatcatgttact
gaaatatatggacgtgaagcagttgcacagatcattacttttggtagtatgacagctaaa
gctgttattcgcgatgtgggtcgtgtacttggtcatccttacggttttatcaatcgtatt
tcaaaaatgataccttctgatccaggtatgactctggaaaaagctttttctgctgaccca
atattattacaaacctataacgcagatgaagaagttaaagcccttgtagatatggcgcgt
aaacttgagggagttattcgtaatgctggtaaacatgctggcggtgtcgtaatttcacca
actaaaattactgattttgctccgctgtactgtgatgaagatggtaatcatccaatgact
caatttgataaaaatgatgtggaagataccggattagtaaaatttgatttccttggctta
cgaaccctgactattatagattatgcagtgaaaatgattaacctacgcttaaaaaaatat
gatttaaaacctctcaatatttctactatttcactcaatgatcaaaagagctttgaaata
cttcaacgtgctgaaacaactgcagtgtttcaacttgaatcgcgcggtatgaaagacctg
atcaagcgtctcaaaccggactgttttgaagacataatagcattagtagcactgtttcga
ccaggtcctttacaatctggtatggtagataattttattaatcgcaagcatggtcgtgaa
aaaattgcttatcctgatcatcgttggcaacatgaaagcttaaaacctgttttgcaatca
acctatggtatcattttatatcaagaacaggtaatacaaattgcgcaagttcttgcaggt
tatacgctcggcagtgcagatgtgcttcgtcgtgcaatggctaaaaaaaagccaaacgaa
atgcttaaacaacgttgtatatttcgtgagggtgccaaaaaaaatgatattgatggcgta
ctatcaatgaaaatatttgatttagtggaaaaatttgcagggtatggttttaataaatca
cattcagctgcttacgctttggtatcatatcaaactttatggttaaaatcgaattataca
gcggaatttatggcagcagcaatgagtgctgatatggataacactacaaaaatagtggca
ttagtagatgaatgttatcgtataggtttaaatgtcttgaaacctgatattaactcaggt
ttatatcattttcatgtcaatgatgaaggtaaaatcgtttacggcattggagctattaaa
ggtgttggtaaaagtactattgaagcaattatcgatgcacgtaatcaaggcggtcttttt
aaggatttatttgacctttgtatccgtactaatattaaaaaattcaaccgtcgcgtgctg
gaaatattgatcatatcaggagcatgtgatgctcttggtgcacatcgcgcatcattgatg
aacgatgtgcaaattgctttaaaaatagctgatcagcgtatgcaaacaaaaactattgga
caaattgatatgtttggaattttatcaaacagtccacaagaaataaaaaagtctcgcata
cgaccttggtcaaaagaagttcaacttagaggggaacgcgatacattaggtctgtatctt
acgggtcatcctatagatcagcatcttaaagaaattcaatattatgtcaatggtacgtgt
ctaaaagatatatcgaaaacagaacacggtaaaataaccgttgttgctggtttagtaatt
tcagctcgggtgatttgtactaaacgtggtaatagaatgggtattcttactcttgatgat
cggtcgggttatatagaaataatattatttactgaagtatttgaaaaatataagcattta
gtagaaagagatcgtatcttaatcgtacatggtcagataagcttaaatgattttaatcag
agtctcaaaatctctgcacaaaaaattatggatatcgatgaagctagaaaaaaatatgtg
catgcacttgctatctttctcaacgattctcaaatagatgaacaatttttaaaacatttt
cggaaaattttagaaccttattgttcaggaaatattccagtgcatgtctattatcaaaaa
aaagacgctaaggcaaaattgctttttggtacagcatggcgcatttctttaaataattct
ttacttaatgagttacgattattagtaggatcacagcaagtggagctggaatttaattaa
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