Candidatus Pantoea carbekii US: BMSBPS_0162
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Entry
BMSBPS_0162 CDS
T03853
Name
(GenBank) tRNA pseudouridine synthase A TruA
KO
K06173
tRNA pseudouridine38-40 synthase [EC:
5.4.99.12
]
Organism
pck
Candidatus Pantoea carbekii US
Brite
KEGG Orthology (KO) [BR:
pck00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pck03016
]
BMSBPS_0162
Enzymes [BR:
pck01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.12 tRNA pseudouridine38-40 synthase
BMSBPS_0162
Transfer RNA biogenesis [BR:
pck03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
BMSBPS_0162
Prokaryotic type
BMSBPS_0162
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PseudoU_synth_1
DUF2344
Motif
Other DBs
NCBI-ProteinID:
AKC31985
UniProt:
U3U2X6
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All DBs
Position
229439..230248
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AA seq
269 aa
AA seq
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MLCEKRQVFKIALGVEYNGSGYYGWQSQQKLCSVQEKLENALAKIANHSIRIFCAGRTDV
GVHSTGQVVHFLTTSNRLDSAWTVGVNANLPADIAIRWVKRVPFDFHARFSAIARYYRYA
IYNKRLRSAIMNKTLTHFSRPLDIAKMLRSGRCLIGEKDFTSFRSTQCQSRTPFRNIMYF
NVFRRGPYVIIDIKANAFLRHMVRNIVGSLMQIGCGRHPEDWLETLLAAKDRKVAAATAK
PEGLYLIGVEYPSHFALPTYVTQPLFFIN
NT seq
810 nt
NT seq
+upstream
nt +downstream
nt
atgctatgtgaaaaaagacaagtatttaaaatagcattaggcgttgagtataatggcagc
ggttattatggttggcaatctcagcaaaaattatgcagcgtacaagaaaagttagaaaac
gcacttgcgaaaatagctaatcatagcattcgtatattttgtgcaggacgtacagatgtt
ggagtacatagtactggtcaggtagtacattttttaactacatcaaatcgtcttgatagt
gcatggacagtaggtgtaaatgctaatctacctgctgatatagcaatacgctgggtaaaa
agggtaccatttgacttccatgcgcgctttagtgccattgcacgatattatcgctatgca
atttataataaaagattgcgttcagctattatgaataaaactttaacacatttttctcgt
ccattagatatagcaaaaatgctacgttctggaagatgcttaattggagaaaaggatttt
acttcgtttcgttccactcaatgccaatcacgtacaccatttcgtaatataatgtatttt
aatgtttttcgtcgaggtccatatgtgattattgatattaaagctaatgcgtttttacga
catatggtgcgtaatattgttggcagtttaatgcaaattggatgtggtcgtcatccggaa
gattggctggaaactctactagctgctaaggatcgtaaagttgctgcagctactgcaaaa
cctgaaggattatatcttataggagtagagtacccatctcactttgcattgcctacgtat
gtaacgcaaccattgttttttataaattaa
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