Candidatus Pantoea carbekii US: BMSBPS_0261
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Entry
BMSBPS_0261 CDS
T03853
Name
(GenBank) exoribonuclease II Rnb
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
pck
Candidatus Pantoea carbekii US
Brite
KEGG Orthology (KO) [BR:
pck00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pck03016
]
BMSBPS_0261
Enzymes [BR:
pck01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
BMSBPS_0261
Transfer RNA biogenesis [BR:
pck03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
BMSBPS_0261
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
S1
CSD2
S1CSD-TOTE-2
ODP
FAD_syn
Motif
Other DBs
NCBI-ProteinID:
AKC32076
UniProt:
U3U811
LinkDB
All DBs
Position
complement(375968..377917)
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AA seq
649 aa
AA seq
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MFQDNILLAQLKKTLHAQIPRVEGIVKKTEKSFGFLEIDTQKSYFIPPIHMKKVMHGDRI
IALIRIDKNRESAEPESLVEPFLTRFVGRVQKKESYLSIIPDHPLLKDAIQCRPINNLHH
EFQTGDWAVAQLRDHPLKGDLGFYAELTEFITTANDDLAPWWVTLSRYNLEREAPEEINF
SNMLSEEHSQRHDLTALDFITIDNASTEDMDDALYVTENLKGDFCLTIAIADPTAYISEG
SELDKQAAQRAFTNYLPGFNIPMLPRKLSDHLCSLRPNVSRPALVCRVSVLKDGSVKDDI
DFFTAWIKSKAKLVYDQVSDWIEEVKDDCWKPENEVIIQQINLLRRLCLARWKWRKTHAL
VFQERPDYRFIFGQKSEVLDIVAEPRRIANRIVEEAMILANICAAKILRDKLGFGIYNVH
TGFDLINAEQISNILSSHGIVVDPKKITTLDGFCQLRRQLDAQPTQYLNSCIRRFQSFTE
ISTRPGPHFGLGLDVYATWTSPIRKFGDMINHRLLKAILRGKTIMCPDDKLTKIMKERRR
LNRMAERDVNDWLYASFLVHFAGVNKQYFSAEIIDILRAGMRIRLQKNGAIAFIPSSFIH
SFRDELICSQENGTCQIKGKIMYRVTDVINVTIVKVNMETRSVIANLVT
NT seq
1950 nt
NT seq
+upstream
nt +downstream
nt
atgttccaagataatatactcctagctcagcttaaaaaaacacttcatgcacaaattcca
cgcgttgaaggtattgtaaaaaaaacagaaaaaagttttggttttcttgaaatcgatacc
cagaaaagttattttatcccaccgatacatatgaaaaaagtaatgcatggtgatcgaatt
atagcgttaatccgtattgataaaaatagagaaagtgccgaaccagagtcgcttgttgaa
ccatttttaactcgttttgtaggacgtgttcaaaaaaaagagagctatctatcgatcatt
cctgatcatccgcttttaaaagatgctatacagtgccgtcctatcaataatctacatcat
gagtttcaaactggtgattgggctgttgctcaattgcgagatcaccctttaaagggtgat
ctcggattttatgctgaattaactgaatttattaccacagcaaacgatgatcttgcacca
tggtgggttacattatcacgttataatttggaacgtgaggcgcctgaggaaataaatttt
agtaacatgcttagtgaagagcactcgcaacgtcacgatcttactgctttagattttatc
acaattgataatgctagtactgaagatatggatgatgcattatatgttactgaaaattta
aaaggtgatttttgtttaactatagctattgctgatccaacagcttatatttcagaaggt
agtgaattggataagcaagctgctcaacgtgcatttaccaattacttgccaggttttaat
attccaatgctaccacgcaaactatctgatcatctatgttcattacgtccaaatgtgagc
cgtccagcattagtatgtcgtgtatctgtgcttaaagacggtagtgtaaaagatgatatt
gatttttttactgcttggattaaatctaaagctaaattagtgtatgatcaagtttcggat
tggattgaagaagttaaagacgactgctggaaaccagaaaatgaagtaattatacaacag
attaatctattacgccgtttatgtttggcaagatggaaatggcgtaaaacccatgcacta
gtgtttcaagaacgtccagattaccgttttatttttggccaaaaaagcgaagtactagat
attgttgctgaaccacgtcgtattgctaatcgcatagtagaagaagcaatgattttagct
aatatatgtgctgctaaaatacttagagataaacttggttttggtatttataatgtacat
actggttttgatttaataaatgctgaacaaatatctaacattctttccagtcacggtatt
gttgttgatcctaaaaaaattacaacgctagatggtttttgtcaattgcgtcgtcaactt
gatgcacaacctacccagtatcttaatagttgtattcgtcgttttcaatcttttacagaa
attagtactagacctggaccacattttggactcggtttggacgtttatgcaacttggact
tcaccgattcgtaaatttggagatatgattaatcatcgtttactaaaagcaattttgcgt
ggaaaaactatcatgtgtcccgatgataaattgactaaaatcatgaaagaacgtcggcga
ttaaaccgtatggctgaacgtgatgtaaacgattggctttacgcaagttttttagttcat
tttgcaggtgtcaacaagcagtatttcagtgctgaaattattgatattttacgagcgggt
atgcgtatacgtttacaaaaaaatggagctattgctttcattcctagtagttttattcat
tcatttcgggatgaattaatttgttcacaggaaaatggaacttgtcaaattaaagggaaa
attatgtatcgcgttacagatgttataaatgtcactattgttaaagtgaatatggaaaca
cgtagtgtaattgcaaatttagttacttga
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