Candidatus Pantoea carbekii US: BMSBPS_0472
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Entry
BMSBPS_0472 CDS
T03853
Name
(GenBank) DNA helicase II UvrD
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
pck
Candidatus Pantoea carbekii US
Pathway
pck03420
Nucleotide excision repair
pck03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pck00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BMSBPS_0472
03430 Mismatch repair
BMSBPS_0472
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pck03400
]
BMSBPS_0472
Enzymes [BR:
pck01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BMSBPS_0472
DNA repair and recombination proteins [BR:
pck03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BMSBPS_0472
MMR (mismatch excision repair)
Other MMR factors
BMSBPS_0472
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PcrA_UvrD_tudor
UvrD_C_2
AAA_30
Motif
Other DBs
NCBI-ProteinID:
AKC32267
UniProt:
U3U6W3
LinkDB
All DBs
Position
complement(662495..664660)
Genome browser
AA seq
721 aa
AA seq
DB search
MVPMNVLNLFDSLNDKQREAVVTKCSKLLVLAGAGSGKTRVLIHRIAWLLLVEKYSPCSI
LAVTFTNKAAAEMRQRINRLVNGNQKNMWIGTFHGLAHRLLRLHYRDANLPQHFQILDDE
DQLRLTKRLIKNMNLDEKKWSAKQVIRYINSKKDEGIRPHDIEKHGQTIEKTWLLIYQFY
QETCDRSGLVDFSELLLRSYELWLNKPNILNNYQERFSNILVDEFQDTNNIQYAWIRMLV
GNTGHITIVGDDDQSIYSWRGAQIKNIKKFLEDFSDAIIIRLEQNYRSTNNILKAANSLI
SKNNLRLGKKLWTNSNEGEAISLYCALNELEEARFVVKCIQEWRKDGNQLAHCSILYRSN
AQSRVLEEYLLKSRVPYRIYSGMRFFERQEIKDVLAYLRLIANRYDDTAFERIINTPMRG
IGNRTLSIIRQKAQEEKITLWQATFELLQSKVLCTHVAIKLYRFCKLIDTLATETKNVPL
YVQTNRVIKDSGLWLMYEKDKEDHSKTRIENLKELVTATRQFIYEDQDNSLTPLQAFLSY
VSLEADENQPDQWQDAVQLMTLHAAKGLEFSLVFIVGMEEGMFPNQMSLDEMGHLEEERR
LAYVGVTRAMKKLTLTYAATRRLYGKKICHYPSRFISEIPSECLKEINLNDANYLLNVKN
KNIANNINNIFTVGQRVHHAKFGQGTVINFKGSGKQSCFQVAFQNYGVKWMVAEYACLKK
V
NT seq
2166 nt
NT seq
+upstream
nt +downstream
nt
atggtacctatgaacgttcttaatctgtttgatagtttaaatgataaacaacgcgaagca
gttgttacaaaatgtagtaaattattagtattagctggagcaggcagtggaaaaacccgt
gtgctcattcatcggattgcgtggttattattagtagaaaaatattcgccttgctcaatc
ttggcagttacatttactaataaagcagcagcagagatgcgacaacgcattaatcgatta
gtgaatggtaatcaaaaaaatatgtggattggcacatttcatggcttggcacatcgacta
ttacgtcttcactatcgtgatgctaatttgccccaacattttcaaattcttgatgatgaa
gatcaattacgtttgacaaaacgtttaataaaaaatatgaatttagatgaaaaaaaatgg
tcggcaaaacaagttatcagatatattaatagcaaaaaagatgaaggaattcgacctcat
gacattgaaaaacacggtcaaacaatcgaaaaaacctggctgcttatctatcaattctat
caagaaacttgcgatcgttctggattggtagacttttccgaacttctgctacgttcgtat
gagctgtggttgaataaaccaaatattcttaataactaccaagagcgtttttccaatatt
ttagtagatgaatttcaagatactaacaatatccagtacgcgtggattcgtatgctggta
ggtaatactggtcatattactatagttggtgatgacgatcaatcaatttatagttggcgt
ggtgcacagatcaaaaatattaaaaaatttttagaagatttttcagatgcaataattatt
cgtttagaacaaaactaccgttcaactaataatattctaaaagctgctaatagtttaatt
tctaaaaataatcttcgtttaggtaaaaaactttggactaatagcaatgaaggagaagca
atttcattgtattgtgctttaaatgaattagaagaagcacgttttgtagtcaagtgtatc
caagagtggagaaaagatggtaatcaattagctcattgtagtattttatatcgcagtaat
gctcagtcgcgtgtgttagaagaatatttattaaaatcaagagtaccttaccgtatttat
agtggtatgcgattttttgaacgtcaagaaattaaagatgtactcgcttatttgcgtcta
atagcaaatcgttatgatgacactgcttttgaacgtataattaacacacctatgcgtggt
ataggcaatcgcactttgagtattattcggcaaaaagcacaagaagaaaaaattacgtta
tggcaagctacctttgagttattacaatctaaagtattatgtactcatgtagcgataaaa
ttatatcgtttctgtaagttaatagatactctggcgactgaaactaaaaatgttccactt
tatgtgcaaacaaatcgtgtgattaaagatagtggtttatggctaatgtatgagaaggat
aaagaagatcacagtaaaacacgcattgaaaatcttaaagaacttgtaacagcaacacgt
caatttatctatgaggatcaagataatagtttgacaccattacaagcatttttatcatac
gtatcattagaagcagatgaaaaccagcctgatcaatggcaggatgcagtacaattaatg
accttacatgctgcaaagggtttagaatttagtttagtatttatagtaggtatggaagaa
ggaatgtttccaaatcagatgtcactggatgaaatgggacatttagaagaagagcgtcgt
ttagcttatgttggtgtaacacgagctatgaaaaaattgacattaacatatgccgcaaca
cgtcgtctgtatggtaaaaaaatatgtcattatccatcacggtttattagtgaaataccg
tcagagtgtttaaaagaaataaatttgaatgatgctaattatttattaaatgttaaaaac
aaaaatatagcaaataatatcaataatatatttactgttggtcaacgtgttcaccacgca
aagtttggtcaaggaacagtaattaatttcaaaggaagcggtaaacaaagttgttttcaa
gtggcatttcaaaattacggagtgaaatggatggtagcagaatatgcttgtttaaaaaaa
gtgtag
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