Pyrobaculum calidifontis: Pcal_0546
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Entry
Pcal_0546 CDS
T00483
Name
(GenBank) CRISPR-associated exonuclease, Cas4 family
KO
K07464
CRISPR-associated exonuclease Cas4 [EC:
3.1.12.1
]
Organism
pcl
Pyrobaculum calidifontis
Brite
KEGG Orthology (KO) [BR:
pcl00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02048 Prokaryotic defense system [BR:
pcl02048
]
Pcal_0546
Enzymes [BR:
pcl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.12 Exodeoxyribonucleases producing 3'-phosphomonoesters
3.1.12.1 5' to 3' exodeoxyribonuclease (nucleoside 3'-phosphate-forming)
Pcal_0546
Prokaryotic defense system [BR:
pcl02048
]
CRISPR-Cas system
Type I CRISPR-Cas system
Subtype I-A factors
Pcal_0546
Subtype I-B factors
Pcal_0546
Subtype I-C factors
Pcal_0546
Subtype I-D factors
Pcal_0546
Type II CRISPR-Cas system
Subtype II-B factors
Pcal_0546
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cas_Cas4
PDDEXK_1
DUF4143
HSDR_N_2
Ca_bind_SSO6904
Motif
Other DBs
NCBI-ProteinID:
ABO07973
UniProt:
A3MTK6
Structure
PDB
PDBj
LinkDB
All DBs
Position
complement(518375..519016)
Genome browser
AA seq
213 aa
AA seq
DB search
MELLSPKPLCSVVNCEDLEKLDHVSALNELRREQEIFKLLPGIYAHRYDFRRVSPSIIND
FEYCPRLLWVQHKLGLKLLSEKSVVSIIRGRILHERYERLLSQYENVVAEYKVEIGDLVG
VVDLVIKRGGEYIPVEIKTGFSKEAHKTQLQIYISMLKARFGYLVYRNHVEVVHRNDAAL
DVLKKIREILSAREAPPAKCNSCIFKPICKNLL
NT seq
642 nt
NT seq
+upstream
nt +downstream
nt
atggaactgctatctcctaagccgctctgtagcgtcgtaaactgtgaagacttggagaag
ctcgaccacgtcagcgccttgaacgagctgaggagagaacaggagatattcaagttgctt
ccggggatctacgcacataggtacgacttcagacgtgtctctccctcaattataaacgac
tttgaatattgcccccgcctactgtgggttcagcacaagctcgggctcaagttgctcagc
gagaagtcggtggtgtccataataaggggtagaattctgcacgagagatacgaacggctc
ctctctcagtacgagaacgtggttgctgagtacaaggttgagataggcgacctcgtgggc
gtagtggacttggtgattaaacgcggcggcgagtatatacctgttgagataaagactggc
ttcagcaaggaggctcacaagactcagctacagatatacatatctatgttgaaggcccgt
ttcggctacctggtatacagaaaccacgtggaggtagtacacaggaacgacgccgcgctt
gacgtgcttaagaaaatacgtgaaattctcagcgccagagaagcgccgccggcaaaatgc
aatagctgtatatttaaacccatatgtaaaaatcttctatag
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