Pyrobaculum calidifontis: Pcal_1115
Help
Entry
Pcal_1115 CDS
T00483
Name
(GenBank) DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
pcl
Pyrobaculum calidifontis
Brite
KEGG Orthology (KO) [BR:
pcl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pcl03032
]
Pcal_1115
03400 DNA repair and recombination proteins [BR:
pcl03400
]
Pcal_1115
Enzymes [BR:
pcl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
Pcal_1115
DNA replication proteins [BR:
pcl03032
]
Prokaryotic type
DNA Topoisomerases
Pcal_1115
DNA repair and recombination proteins [BR:
pcl03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
Pcal_1115
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim
Sp-DndD
Toprim_4
Toprim_2
EF-hand_Zip
Motif
Other DBs
NCBI-ProteinID:
ABO08540
UniProt:
A3MV73
LinkDB
All DBs
Position
complement(1047420..1049210)
Genome browser
AA seq
596 aa
AA seq
DB search
MKLIVAEKRSVAKAIAQFLGGSYRAQRVYGVPAYFFNYGGEAVSLGLMGHIMDFDFAARE
NVWTWIPPEQLFHATPLLVIRDEAAQYVKALQSLARRADEVYLALDADVEGEAIAYEAAI
AVRAVNRRARLYRVKFNAVTPKDIRAAFQKPDTLNLKLVEKVFTRMQIDLTLGAVFTRAL
TLSVRNSLEKGQFLSYGPCQTPVLGIVVNRELERINFKPEKYYVIKAVVDIGGHRVEMGS
EVRYKTRAEAEAAASLIKRGVVKAAVYRPHKVEPPEPLETVELERRASRWLGINSKKTLD
VAEELYRAGYISYPRTETTIYPPSLDLREVLQELAKGEHGEYARGLLKAGFRPTRGDSDD
GAHPPIYPTKGATKDELYRRFGKAAAYAWPIYDFVVRHFLATLSPPAVVEKQKIVVSFGK
IELEAEGQRTLDEGYWRIYPWERQAEKPLPVVKPGEAAYAVKVSVVERETQPPPPMTESE
LLALMKKYGIGTDATMQDHIHTNVKRGYMRLQKGKCTPTPLGMALATALFQYVPELIEPT
VRAKIERALNSIVRDGVPPAKLAAEVKAEFAKYFEKLQQHRREIKEALEKALNSSP
NT seq
1791 nt
NT seq
+upstream
nt +downstream
nt
gtgaaactcatcgtcgccgagaagcggtcggtggctaaggcaatagcccagttcctcggc
ggaagctacagagcccaaagggtctacggcgtcccagcgtacttcttcaactacggcggc
gaggccgtcagcctgggcctcatgggccacatcatggacttcgacttcgcggcgcgtgaa
aacgtgtggacttggataccccccgagcaactctttcacgccactccgctcctcgtcata
cgcgacgaggcggcgcagtacgtcaaggcgcttcagtccctcgcacgaagggcagacgag
gtttacctcgccctagacgccgacgtggagggagaggctatagcctacgaggccgccata
gccgtgagggcagtcaacaggagagccaggctgtaccgagtgaaatttaacgcagttacg
ccgaaggacataagagccgcctttcaaaagcccgacacactaaacctcaagctagtggag
aaggtatttaccaggatgcagatagacctcaccctaggcgccgtcttcacaagggcgctg
acgctctccgtgagaaactcgctggagaaggggcagtttctaagctacggcccctgccag
acgccggtgctcggcattgtggtcaacagagagctagagcggataaacttcaagccggag
aagtactacgtaataaaagccgtggtggacatagggggccaccgggtggaaatgggctca
gaagttaggtataagactagggctgaggcagaggccgccgcctctctaattaagcgcggc
gtcgtaaaagcggcggtgtacaggccacacaaggtggagcccccagagcctctggagact
gtggagctggagcggagagccagccggtggcttggaataaactcgaaaaagacgcttgac
gtggccgaggagctctaccgcgccggctatatctcatacccaagaactgagacaaccata
taccccccgagcctagacctgcgggaggtcctacaagagctcgccaagggagaacacggg
gagtacgccagggggctactcaaggccgggtttaggcccacgaggggcgactcagacgac
ggcgcccacccgcccatataccccaccaagggggccaccaaagacgagttgtacagacgg
tttggaaaagccgcggcatacgcgtggcccatatacgacttcgtagtccgccacttccta
gccaccctaagcccccccgccgtggtggaaaaacagaagatagtggtctcctttggcaaa
attgagctagaggcagaggggcagagaacgctggacgaggggtactggcgcatctacccc
tgggagaggcaggcggaaaagccgcttccagtggtaaagccaggcgaggcggcgtacgcg
gtcaaggtctccgtagtggagagggagacccagccaccgcccccaatgactgagtcggag
ctcctcgcgctcatgaagaagtacggcataggcacagatgccacaatgcaagaccacatt
cacacaaacgtcaagaggggctacatgaggctacagaaaggcaagtgtacgccaacgccg
ctggggatggccctggccaccgccctcttccaatacgtcccagagctcattgagccgacc
gtcagggccaagatagagcgcgcactgaactcaatagtccgagacggagtgcccccggca
aagctggcggctgaggtaaaggcagagttcgccaaatactttgaaaaactacagcaacat
cggagggagataaaagaagcccttgaaaaagctttaaactctagtccatga
DBGET
integrated database retrieval system
