Pyrobaculum calidifontis: Pcal_1630
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Entry
Pcal_1630 CDS
T00483
Name
(GenBank) tRNA intron endonuclease
KO
K01170
tRNA-intron endonuclease, archaea type [EC:
4.6.1.16
]
Organism
pcl
Pyrobaculum calidifontis
Brite
KEGG Orthology (KO) [BR:
pcl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pcl03016
]
Pcal_1630
Enzymes [BR:
pcl01000
]
4. Lyases
4.6 Phosphorus-oxygen lyases
4.6.1 Phosphorus-oxygen lyases (only sub-subclass identified to date)
4.6.1.16 tRNA-intron lyase
Pcal_1630
Transfer RNA biogenesis [BR:
pcl03016
]
Prokaryotic type
tRNA spricing factors
tRNA splicing endonucleases
Pcal_1630
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Gene cluster
GFIT
Motif
Pfam:
tRNA_int_endo
tRNA_int_endo_N
tRNA_int_end_N2
TSEN34_N
Nup35_RRM_2
Motif
Other DBs
NCBI-ProteinID:
ABO09047
UniProt:
A3MWN0
LinkDB
All DBs
Position
1518664..1519218
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AA seq
184 aa
AA seq
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MIKGVLRGLAVVVEDVESGRELYRRGFYGRFLGYDKVKREEVDKVDAPLILALYEALYLA
EKGVLTVVDENGVEIPPQQLVELGRARIKNFDDIYKIYKYFRDLGYVVKSGLKFGALFSV
YEKGPGIDHAPMVVVFLEPDKGISATDITRGGRLGHSVKKTFTLATVLKPAGEVALLGFT
WARL
NT seq
555 nt
NT seq
+upstream
nt +downstream
nt
atgatcaaaggcgtcttgaggggccttgcggtagttgtagaagacgtagaaagcggcagg
gagctgtataggcggggcttctacgggcggtttctaggctatgacaaggtgaagagggag
gaggtggataaggtagatgccccgctgatactagccctctacgaggcgttgtacctcgcg
gagaagggggtgttgacggtggtggatgagaacggagtggaaataccgcctcaacagttg
gtggagctgggtagggctaggattaagaacttcgacgatatatacaagatatacaagtac
tttagagacttgggctacgtggttaagagcgggcttaagttcggcgccttgttctcagtg
tacgagaaggggccgggcatagaccacgcgcctatggtggtagtgtttttggagcctgac
aagggcatctcggctacggacattacgaggggtgggaggctggggcacagcgttaaaaag
acctttaccttggccactgtgctgaagccggcgggggaggtggctctgctcggctttacc
tgggcgcgcctctag
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