Pyrobaculum calidifontis: Pcal_1809
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Entry
Pcal_1809 CDS
T00483
Name
(GenBank) AAA family ATPase, CDC48 subfamily
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
pcl
Pyrobaculum calidifontis
Pathway
pcl04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
pcl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
Pcal_1809
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcl03019
]
Pcal_1809
03009 Ribosome biogenesis [BR:
pcl03009
]
Pcal_1809
04131 Membrane trafficking [BR:
pcl04131
]
Pcal_1809
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pcl04147
]
Pcal_1809
Messenger RNA biogenesis [BR:
pcl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
Pcal_1809
Ribosome biogenesis [BR:
pcl03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
Pcal_1809
Membrane trafficking [BR:
pcl04131
]
SNARE
SNARE associated proteins
Others
Pcal_1809
Autophagy
Aggrephagy
Other aggrephagy associated proteins
Pcal_1809
Exosome [BR:
pcl04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
Pcal_1809
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
CDC48_2
AAA_16
AAA_2
AAA_5
AAA_22
AAA_14
AAA_33
Vps4_C
TIP49
AAA_28
IstB_IS21
nSTAND3
AAA_18
Mg_chelatase
RNA_helicase
AAA_24
Sigma54_activat
AAA_7
TsaE
ABC_tran
AAA_17
ATPase
MazE_antitoxin
DUF815
Zeta_toxin
AAA_19
PhoH
AAA_lid_PRS2_C
NPHP3_N
Parvo_NS1
AAA_30
SLFN-g3_helicase
Motif
Other DBs
NCBI-ProteinID:
ABO09226
UniProt:
A3MX59
LinkDB
All DBs
Position
1678654..1680864
Genome browser
AA seq
736 aa
AA seq
DB search
MSSEVILKVAEARSRDVGRSIVRLPVRIMRKLGVEPGDYVEVIGRKSAYAQVWPAYPEDE
DKEIIRMDGIIRQNAGVGIGDTVKVRKVQLKPAQRVVLAPTEPVRVDPEYLKKQVLLGKP
IARGQAIDVPFYGGAIRFVVVQVQPGPAAYVSIDTEVTVREEPVKEAELTIPKVTWEDIG
DLEDAKQKIRELVELPLRHPELFKHLGIEPPKGILLIGPPGTGKTLLAKAVANEANAYFV
AINGPEIMSKYYGESEARLREIFEEAKKNAPAIIFIDEIDAIAPKREEVTGEVEKRVVAQ
LLTLMDGLQERGQVIVIGATNRPDAVDPALRRPGRFDREIHIPMPDKRARREILAVHTRN
MPLCTKADVESGVCKPGDEVDLDKIAEMTHGYTGADIAALAKEAAMSALRRAIENRLINV
DQDVIPQETLSKLKVGMSDFLNAMKYVHPTVLREVIIEVPEVHWDDIGGYDSIKQELREI
VEWPMKYRHYFDELGVEPPKGILLFGPPGVGKTLFAKAVATESGANFIAVRGPELLSKWV
GESEKAVREVFKKARMAAPCVIFFDEIDSIAPARGTRLGDSGVTDRIVNQLLAEMDGIGT
LKNVVVMAATNRPDILDPALLRPGRFDRVIYVPPPDFKARVEIFKVHTKKIKLADDVNIE
ELAKRTEGYTGADIAALVREAAMLALREVIREGKVKPVSMRHFEEALKRVPPSLTPEDIR
RYEEMAKRVRRTIAGL
NT seq
2211 nt
NT seq
+upstream
nt +downstream
nt
atgtctagcgaggtcattctaaaggtagctgaggctaggtcacgcgacgttggccgaagc
attgtgagactccccgtgagaataatgaggaagctgggggtagagcccggggactacgtg
gaggttattgggaggaagtcggcctatgcgcaagtgtggcccgcctaccccgaggacgag
gataaggagattatacgcatggacggcatcattaggcaaaacgcaggcgttggcataggc
gacacggtgaaggtgcgtaaggtgcagttaaagccagcccagagggtcgtcctagcgcca
acagagcctgtgagagtagaccccgagtacctaaagaagcaagtgctacttgggaaacca
atagcgcggggccaagccatcgatgtgcccttctacggcggtgccataagatttgtagtt
gtgcaggtacagccggggccagccgcttacgtctccatagacacagaggttacggtgaga
gaggagcctgtaaaagaggccgagctcacaatacccaaggtcacttgggaggatattggt
gatttggaggatgctaagcagaagattagggagcttgtggagcttcctcttcggcatcct
gagctttttaagcacttggggattgagccgcctaagggcattctgctgattgggcctcct
ggcactgggaagacgcttttggccaaggccgtggccaacgaggctaacgcctacttcgtg
gccattaacgggcctgagattatgtccaaatactacggcgagtctgaggctaggctgaga
gagatcttcgaagaggctaagaagaacgcccccgcaatcatcttcatagacgagatcgac
gccatagcgcccaagagagaggaggtgaccggcgaagtggagaagagagtagtggcacag
ctcctcaccctaatggacggactacaagaaagaggacaggtaatagtcataggagccaca
aaccgcccagacgcagtagacccagcgttgagaagaccgggaagattcgacagagagatc
cacatacctatgccggacaagagggctaggagggagatattggcggtgcacactaggaat
atgcctctctgtaccaaggccgatgtagaaagcggcgtgtgcaagcccggcgacgaggtg
gatttagataaaatagccgagatgacgcacggctacactggcgcagatatagcggcgttg
gcaaaggaggcggccatgagcgcgttgaggagggctattgaaaaccgcttgataaacgtg
gaccaagacgtaattccacaggagacgctcagcaagctgaaggtgggaatgtcggacttc
ttaaacgccatgaagtacgtgcacccgacggtgctgagagaggtgataatcgaagtgcca
gaggtccactgggacgacatagggggatacgactcaattaagcaggagctcagggagata
gtggagtggcccatgaagtatagacactacttcgacgagctgggcgtagagccccccaag
ggcatactgttgttcggcccacccggcgttggaaaaaccctattcgccaaggcggtggct
accgagtctggggccaacttcatagcggtgagggggccagagctgttgtccaagtgggtc
ggcgagtcggagaaggccgtccgcgaggtgtttaaaaaggccaggatggccgcgccttgc
gtcatcttcttcgacgagatagactcaatagcgcctgccagaggcacgcgcctcggcgac
tctggcgtgacggacaggatcgtaaaccagctcctcgccgagatggacggcataggcact
ctgaaaaacgtggtagtcatggcggccaccaataggcccgacatattagaccccgcgttg
ctgaggcccggcagatttgacagagtgatatacgtcccgccgcccgacttcaaggccagg
gtagagatcttcaaggttcacacgaagaagataaagctggccgacgacgtcaacatagag
gagctcgccaagaggactgagggctacactggcgcagacatagcggcgttagtgagagag
gcggccatgctcgccctccgggaagtcatcagagagggcaaagtgaagcccgtctcaatg
aggcactttgaggaggccctaaagcgggtgccgccgtctctcacacctgaggacataagg
cggtacgaggaaatggcaaagagagttaggagaacaatcgccggcctctag
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