Pyrobaculum calidifontis: Pcal_2115
Help
Entry
Pcal_2115 CDS
T00483
Name
(GenBank) AAA family ATPase, CDC48 subfamily
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
pcl
Pyrobaculum calidifontis
Pathway
pcl04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
pcl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
Pcal_2115
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcl03019
]
Pcal_2115
03009 Ribosome biogenesis [BR:
pcl03009
]
Pcal_2115
04131 Membrane trafficking [BR:
pcl04131
]
Pcal_2115
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pcl04147
]
Pcal_2115
Messenger RNA biogenesis [BR:
pcl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
Pcal_2115
Ribosome biogenesis [BR:
pcl03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
Pcal_2115
Membrane trafficking [BR:
pcl04131
]
SNARE
SNARE associated proteins
Others
Pcal_2115
Autophagy
Aggrephagy
Other aggrephagy associated proteins
Pcal_2115
Exosome [BR:
pcl04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
Pcal_2115
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
CDC48_2
RuvB_N
AAA_16
TIP49
AAA_22
AAA_5
AAA_33
AAA_14
AAA_28
AAA_2
IstB_IS21
AAA_lid_PRS2_C
Vps4_C
nSTAND3
UFD1_N2
AAA_18
Mg_chelatase
RNA_helicase
AAA_24
DUF815
Sigma54_activat
AAA_7
Zeta_toxin
ABC_tran
NPHP3_N
PhoH
Parvo_NS1
AAA_17
ATPase
AAA_30
SLFN-g3_helicase
Molydop_binding
AAA_19
PRS2_N
Motif
Other DBs
NCBI-ProteinID:
ABO09530
UniProt:
A3MY13
LinkDB
All DBs
Position
1958296..1960491
Genome browser
AA seq
731 aa
AA seq
DB search
MSEWIELRVLESKARDANRPVVRIDPEVMERAGIMVGDVVEIVGRRRTAAKVWNGLPEDR
GKGVIRMNSILRKNADVALNETVRVRRVEPKPAAFVKLAPVSMTIAVDANFLQYIKQRLR
EYVVVEGDMLQIHVLSQPLTFQVIQTKPSNSIVIINDDTQIQIFEKPVSGVKIPHVTWED
IGDLEDAKQKIRELVELPLRHPELFKHLGIEPPKGILLIGPPGTGKTLLAKAVANEANAY
FVAINGPEIMSKYYGESEARLREIFEEAKKNAPAIIFIDEIDAIAPKREEVTGEVEKRVV
AQLLTLMDGLQERGQVIVIGATNRPDAVDPALRRPGRFDREIWINPPDFKGRYEILVIHT
RNMPLGPDVDLRKLAEITHGFTGADLAALAREAAMSALRRAIQSGLIDLNQPSIPPEVFE
KIKVTMADFMGALREIIPSALREVHIEVPRVRWDDIGGLENVKQELREAVEWPLKYPDRF
KKFGLRAPKGILLFGPPGTGKTLLAKAVATESGANFVAVRGPEIFSKWVGESEKMVREIF
RKARMAAPAVIFIDEIDALATARGLGGDSLVSERVVAQLLAEMDGIKALENVVVIAATNR
PDLVDPALLRPGRFDRIIYVPPPDFKARLEILLIHTRATPLAKDVDLEEIARRTEGYSGA
DLELLVREATFLALRENIDTKEVSMRHFEEALKKVRPSVTPDMLKFYESWLERARQLTTP
TKARATPPLYL
NT seq
2196 nt
NT seq
+upstream
nt +downstream
nt
gtgagtgagtggattgaattaagagttctcgagagcaaggcacgggacgctaatcgtcca
gtggtgaggatagaccccgaggttatggagagggcggggataatggtgggcgacgtggtt
gaaatcgttgggaggaggaggactgccgctaaggtgtggaacggccttcccgaggatagg
ggcaagggcgtaattaggatgaacagcatacttaggaagaacgccgacgtggctctcaac
gagactgtaagagtgagaagggtcgagccaaagcccgcggcgtttgtaaagcttgcaccc
gtgtctatgaccatcgccgttgatgcaaacttcctgcagtacattaagcagaggttgagg
gagtacgtggtagttgagggcgacatgttgcaaatccacgtgcttagccagcctctcaca
ttccaagtaattcagaccaagccctccaactccattgtcataataaacgacgacacgcag
attcagatatttgaaaaaccggtgtcaggcgtcaagatcccgcacgtgacttgggaggac
atcggcgatttggaggatgctaagcagaagattagggagcttgtggagcttcctcttcgg
catcctgagctttttaagcacttgggcatagagccgcctaagggcattctgcttattggg
cctcctggcactgggaagacgcttttggccaaggccgtggccaacgaggctaacgcctac
ttcgtggccattaacgggcctgagatcatgtctaagtactacggcgagtctgaggctagg
ctgagagagatatttgaggaggctaagaagaacgcccccgcaatcatcttcatagacgag
atcgacgccatagcgcccaagagagaggaggtgaccggcgaagtggagaagagagtagtg
gcacagctcctcaccctaatggacggactacaagaaagaggacaggtaatagtcatagga
gccacaaaccgcccagacgcagtagacccagcgttgagaaggccgggaagattcgacaga
gagatctggattaatcctcccgacttcaagggccggtatgagatacttgttatacatacc
cggaacatgcctctggggcccgacgtcgatttgagaaaactcgccgagattacacacggc
ttcactggggccgacttagccgccttggcgagggaggcggctatgagcgcgttgaggagg
gctattcagagcgggcttattgacctgaaccaaccctctataccccccgaggtgtttgag
aaaatcaaggtcacaatggccgacttcatgggcgcgttgcgggagattatcccctctgcc
ctcagagaggtgcacatagaggtgccgcgggtccgctgggacgacatagggggccttgaa
aatgtaaaacaggagctgagggaggccgtggagtggcctcttaagtaccccgaccgcttt
aagaagttcggcctgagggcccccaagggcatactgttgttcggcccgccaggcactggg
aagacgcttttagccaaggccgttgccaccgagtctggggccaacttcgtggcagttagg
gggccggagatcttctccaagtgggtgggcgagtctgagaaaatggtcagagagatcttt
agaaaggcccgtatggcggctccggccgttatattcatagacgagattgatgcgctggcc
acggctagggggcttggcggggactctctcgtaagtgagcgggttgttgcacaactcttg
gcagagatggacggcataaaggccctggagaacgtggtggtaatagcggccacaaatcgc
cccgacttggtagaccccgcgttgctgaggccgggcagatttgacagaattatatacgtg
ccgccccccgactttaaggccaggcttgagatcttgctcatacacaccagggctaccccc
ttggccaaagatgtggacttagaggagatagctaggaggactgagggctactcaggcgca
gatttagagctcttggtaagagaggcgacgttcctcgcgcttcgcgaaaacatagacaca
aaggaggtctccatgcgccacttcgaggaggcgcttaagaaagttagaccctctgtgact
cccgacatgttgaagttctacgagtcttggcttgagcgcgccagacagttaactactccg
accaaggccagggcaacgcctccgctgtacctatga
DBGET
integrated database retrieval system
