Procambarus clarkii (red swamp crayfish): 123745321
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Entry
123745321 CDS
T07930
Name
(RefSeq) putative pre-mRNA-splicing factor ATP-dependent RNA helicase PRP1 isoform X1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
pcla
Procambarus clarkii (red swamp crayfish)
Pathway
pcla03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pcla00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123745321
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pcla03041
]
123745321
03009 Ribosome biogenesis [BR:
pcla03009
]
123745321
Enzymes [BR:
pcla01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
123745321
Spliceosome [BR:
pcla03041
]
Complex A
U2 snRNP components
U2 related factors
123745321
Complex B
123745321
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
123745321
Ribosome biogenesis [BR:
pcla03009
]
Eukaryotic type
90S particles
Helicases
123745321
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
Helicase_C
DEAD
AAA_22
Flavi_DEAD
AAA_19
SRP54
ResIII
nSTAND3
AAA_25
AAA_30
ABC_tran
T2SSE
ATPase
TrwB_AAD_bind
NACHT
HTH_IclR
Motif
Other DBs
NCBI-GeneID:
123745321
NCBI-ProteinID:
XP_045581731
LinkDB
All DBs
Position
LG07:complement(11364479..11410004)
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AA seq
746 aa
AA seq
DB search
MSKRKIDIDPSTLRKRYAPDYERESDRESGYSSGTNFNATSARACEPIKPGVNLPASVQR
GAVAMSLNPFTNLPYTPRYYELYRKRIGLPVWEYRNKFFELLDRHQTIVLVGETGSGKTT
QMPQWCVEFARARGKKAVACTQPRRVAAMSVAQRVAEEMDVALGQEVGYSIRFEDCSSSK
TVLKYMTDGMLLREAMSDPMLENYQVILLDEAHERTLATDILMGVLKEVLKQRNDLKLVV
MSATLDAGKFQHYFDKAPLLNVPGRTHPVEIFYTPEPERDYLEAAIRTVIQIHICEEIPG
DVLLFLTGQEEIEEACKRIKREVDALGPDVGDLKCIPLYSTLPPNLQQRIFEPPPPNKQN
GAIGRKVVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRA
GRAGRTRPGKCFRLYTEKAFKSEMQDNTYPEILRSNLGSVVLQLKKLGIDDLVHFDFMDP
PAPETLMRALELLNYLAALDDDGNLTELGAIMAEFPLDPQLAKMVIASCDFNCSNEILSI
TAMLSVPQCFVRPNEAKKAADEAKMRFAHIDGDHLTLLNVYHAFKQNMEDVQWCYDNFVN
YRSLKSADNVRQQLSRIMDRFSLKRTSTDFNSRDYYMNIRKALVSGFFMQIAHLERTGHY
MTIKDNQVVQLHPSTCLDHKPEWVLYNEFVLTTKNYIRTVTDIKPDWLIKVAPNYYDMQN
FPQCEARRQLENIITRLESRQYREGF
NT seq
2241 nt
NT seq
+upstream
nt +downstream
nt
atgtccaaacgaaaaatagacatcgatccatcgacactcaggaaaagatatgctcctgac
tatgagcgagagagtgaccgagagagtgggtacagcagtggcacaaacttcaatgccact
tcagcgagagcttgtgaaccaataaaaccaggggtaaatctcccagccagtgtccaaaga
ggagctgttgcaatgtctcttaatcccttcacaaacctgccatacactccaagatactat
gagttatacaggaaaagaattggccttcctgtgtgggagtatcggaacaaattctttgaa
ttgttggatcgccaccaaactatagtgttagtcggtgaaacaggttctggtaaaactaca
caaatgccacagtggtgtgttgaatttgcacgtgctagaggcaaaaaagcagtggcatgt
acacagccaagaagagtagctgccatgtccgttgcccaacgagttgcagaggaaatggat
gttgctctgggacaggaagttggttattccatccgttttgaagattgttcttcttccaaa
actgtcctcaagtatatgactgatggtatgttattgcgtgaagctatgagtgatcccatg
cttgaaaactatcaggtaattttgcttgatgaggctcacgaacggacacttgccacggac
atcttaatgggtgtcttgaaagaggtcttgaaacaaagaaatgacctcaaacttgttgtc
atgtcagccaccttggatgctggaaaatttcaacactactttgacaaagctcccttgttg
aatgttcctggccgtactcatcctgttgaaatattctatactccagagcctgagagggat
tacctagaagctgccattagaactgttatacagatccacatatgtgaagaaataccaggt
gatgtcttgctatttctcactggtcaagaggagatagaagaggcatgcaagcgtattaag
cgagaggtggatgcacttggtccagatgtcggggatcttaagtgtattcccttatactcg
acacttcctcctaatcttcaacagcgcatatttgaaccaccacctccaaataaacaaaat
ggggcaattggtcgtaaagtagtggtttcaacaaacatagccgagacttcgttgactatt
gacggagttgtgtttgtaattgatcccggatttgccaagcagaaggtatataaccctcgc
atccgtgtagagtcattattggtgtcccctatcagtaaagcatcggcacagcaacgtgca
ggacgtgctgggagaaccagacctggcaaatgtttccgcttgtatacagagaaagctttc
aaaagtgaaatgcaggacaacacataccctgagattttgaggtccaaccttgggtctgtg
gtcctgcagctgaagaagttgggcattgatgatttagttcatttcgatttcatggatccc
ccagcccccgagacactgatgagggcattggagctcttgaactacctagcagctcttgat
gatgatggtaacctgacagagctaggagcaattatggcagagtttccattggatcctcaa
ctagctaaaatggtgatagcttcctgcgatttcaactgctctaatgagatcttgtccatc
actgctatgctatcagtaccccagtgctttgttcgccctaatgaggccaagaaggctgca
gacgaggccaagatgagattcgcacacatagatggggaccacctcacgctgctgaacgtc
taccatgccttcaaacagaatatggaggatgtgcagtggtgttacgacaactttgtcaac
taccgttccctcaagtctgcagacaatgttcgtcaacaattatctcgtattatggaccgt
ttcagtctgaagcgaacttccaccgacttcaattcccgtgactactatatgaatattcga
aaggctctggtatctgggttcttcatgcagattgctcacctggagcgtactggacactac
atgaccatcaaggataaccaggtggtacagctccatccatccacttgtctcgaccataag
ccggagtgggtcctatacaatgaatttgttttaactaccaaaaactacatccgtactgtt
acagacataaaacctgattggctcatcaaagttgcccctaactattatgacatgcagaac
ttcccacagtgtgaggctcggcgccagttggagaacattataactcgtttagaatctaga
cagtacagagaaggtttctaa
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