Procambarus clarkii (red swamp crayfish): 123746679
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Entry
123746679 CDS
T07930
Name
(RefSeq) poly(A)-specific ribonuclease PARN
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
pcla
Procambarus clarkii (red swamp crayfish)
Pathway
pcla03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcla00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
123746679
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcla03019
]
123746679
Enzymes [BR:
pcla01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
123746679
Messenger RNA biogenesis [BR:
pcla03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
123746679
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
CAF1
RNA_bind
Lips
Motif
Other DBs
NCBI-GeneID:
123746679
NCBI-ProteinID:
XP_045584306
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Position
85:19546738..19590237
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AA seq
574 aa
AA seq
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MDVTKENFKAVLPSILRVIGKADFVAIDAEFTGLRHNETSRYCELDTPEERYAKTRDAAQ
SFGMIQFGVTTFRYIREMSAYSHATFCFYLLGKTGEILYYDNSSLKFLADNGFNFNKLYK
SGLSYLSLVDEANKRLDYANQSLEPQAPSPIKVTEESAKKFLEETEALMEEFMADKTRDV
LVLPGTNISPFFRKILYNNIAAKFKNILVRIVPTDGERNVEIRKFDSKESRIKFLEDERE
QILDEKIGFTHVVRKILEVGKPIVGHNLVLDLLHMMEKMVQPLPEKLEQFKSLVKCNIPT
VYDTKLLAKDPPFCVDIPVTSLGAVYSDVCSKFNPPHLVIEEGYESYETGSNSKAHDAGF
DAFMTGVCFVTMVKKLDGSNWKNKSVVKSKHLDMYANRVNNMSSHDIPFLNLVGPDVQPD
RSKIFCVECPSSWTTMHVHGLFHMIKPLKIVWVSSTFLYVIPLEDMDKKACRQHLKNVNA
SCPPLVRVRLYGDTISSKRKSATDEEVSPIQIRASRIHEFKRLKSVGSDQLSKMTLESPS
AEEPPSVISGDNGKKAASKQGKATEDVFSIPDEW
NT seq
1725 nt
NT seq
+upstream
nt +downstream
nt
atggatgtcacaaaggaaaattttaaagcagtcctcccaagtattcttcgagtaattggc
aaggcagattttgtggccattgatgccgaattcactgggttgcgtcacaatgaaacctcg
agatactgtgaactcgatactccagaggagagatatgctaagaccagagatgctgcacag
agttttggaatgattcaatttggagtaacaacatttcggtatataagagagatgtcagcg
tattcccatgcgacgttctgcttctaccttcttgggaaaactggagaaattctctactat
gacaatagtagtctcaaattcttggctgacaatggatttaatttcaataaactttataaa
agtggtctttcctacttgtctctggttgatgaagctaataagagactagactatgcaaac
cagtccttagaaccacaggcaccgtctccaattaaggtaacagaagaaagtgcaaaaaag
ttcttggaagagaccgaagcattaatggaagagttcatggcggacaagacacgggatgtt
ctcgtactgcctggaaccaatatttctccattttttcgcaagattttatataacaatatt
gcagcgaagttcaaaaatattcttgttcgcattgtaccaacagatggtgaaagaaatgtg
gagataaggaaatttgattcgaaggaatctcgaatcaagtttcttgaagatgaacgagag
cagatattagatgaaaagatcggttttacccatgtggtacgcaagattttagaagttgga
aaaccaattgtgggtcacaatttggttttagacctattgcatatgatggaaaagatggtt
cagcctctgcccgagaaactggagcagttcaagtctcttgtcaagtgcaatattcccact
gtatatgataccaaacttctagcaaaggatcctcctttctgtgtagatattccagtgaca
tctttaggagctgtgtatagtgatgtgtgtagcaagttcaaccccccacaccttgtgatt
gaagagggttatgagagttatgaaactggaagcaacagcaaggctcatgacgcaggtttc
gatgccttcatgactggtgtttgtttcgttaccatggtgaagaagctggatggatctaat
tggaaaaacaagtctgtagtgaagtcaaaacacctggacatgtatgcaaacagagtgaac
aacatgagttcccatgacattccattcctcaacttggtgggacctgacgttcagcctgac
aggagcaaaatattttgtgtggagtgtccatcctcatggactacaatgcatgtccatgga
ctctttcatatgattaaacctttgaagatagtgtgggtgagcagcactttcctctacgtc
attcccttggaggacatggacaagaaggcctgtaggcaacatctgaagaatgttaatgct
agctgtcctccattggttcgagtaagattgtatggggacacaattagctctaagagaaaa
tctgcaacagatgaggaggtttcaccaattcagatacgagcaagccgcatacacgagttc
aaaagactgaaaagtgttggatcagatcaactatcaaagatgaccttggagtctccaagt
gcagaagaacctccttccgtaattagtggagataatggcaagaaagctgcatcaaaacaa
ggcaaagcaactgaggatgtattttctatacctgatgagtggtag
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