Procambarus clarkii (red swamp crayfish): 123746855
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Entry
123746855 CDS
T07930
Name
(RefSeq) small subunit processome component 20 homolog
KO
K14772
U3 small nucleolar RNA-associated protein 20
Organism
pcla
Procambarus clarkii (red swamp crayfish)
Brite
KEGG Orthology (KO) [BR:
pcla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pcla03009
]
123746855
Ribosome biogenesis [BR:
pcla03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
123746855
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UTP20_N
UTP20
UTP20_C
DUF3141
Motif
Other DBs
NCBI-GeneID:
123746855
NCBI-ProteinID:
XP_045584636
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All DBs
Position
93:674218..687442
Genome browser
AA seq
2797 aa
AA seq
DB search
MKEKPQRQAHKSTNTFTFRGFGEKVRNLKVSARKFLLQRPQTEDGESVTIFFQTLLKCRE
VNLTEAFQAFQNDLGGDIQTTVQLVHQEKHVAKCLADHLATPNSLALQALLDLLVAFAND
IPQEFYQHHFYEFLLRLVSQLSTKDPEQIESVFLCIVSLFVVLQKYLRDDLYELYHVHQY
ATLLSKAHPWYINELAAQSLAFLIRKIPKRNSFLAIAFRKLKKDESQVQGLGRLIAALIK
SDVAQRLQSVTPQILSSLLDLLGDEDIPTSSALETIAYALKIVAGHITAQHPNKHTKWQT
LWQEDATMVWPTLWRSIQLLVPSAHLPGNSWHHLHAVLQVIEVLVSYKHGVLLVDVSDAL
NQCKTMVQISLPDSVGGTVFNIFSILLLSSHHQITSSTLKDVVSELLSSHYSHVVKFNAI
KQLVDHIRFDTEILPLVLHYLNNLVRTSEVEDIDKEVLSMLAFLVQHKQPPCSTGMDLDS
WRKYPLDFSRTLSPVKGVCEKDIPSLIENRLSKGLMEDLSNLEELLLCLLCLPHVSPLDY
QDVTPYLTWILSDAIEILNDKTEKVIDDDKTVAAKKKGKSETEAPNLTIDLNIKYNINLN
SRKILFLVAALIEVMLHTLTGEDFLASLSQYQILEVLKVKQQYRENVYILKAIDLHFTVA
SSEDDSDIMNEIFFKDIYYILAPALCSANPQVRLLVTHIFSLFPVTLPPPPENMGIVENM
FQIMLKAECVEVTPWAYKDRLRYLSMVDADHVVYHRPICGTFDQAPLLLLLGQLYINYKD
VWNSVLQGISSYAHSLKTDMFWPLWFSRLKIASYNTSQVLQGKTVDPQEDLFFENEILLN
VVQNVSTHHGFKNLPLKPDYLNYRDLLWRAMKKFPDICEAKSRDLVPLFFNFLEEELFPA
DFTVAPTQNLCVRSISNTAVTSEDLSNSALRDASFHQNVEKSYEENKIDHSTPRRAPIKS
LCEQLTVFSQFHNPRMLFQTKKLEKMYKEFLSHPSPALQKLALDCIMAYNHPYLTPYKES
LCKILDDKSFKNALTLFSIDGSEQCVQDDHRNDLMPFLMRILYGKMHFKTGSNSSGKAKI
SVRKSVVLRFLAGARESELNSFLELSFDVLMSHLNGTALDVVNRCCQNLDITKVVPLSRL
QGALTTLENIIEKIGNILTDQIPFLLKIILYIVNLVSLLLEQRAEINERNISFLKHLRQQ
AQKRLLAFFQQFRDYHWSLEEIDAVFQAAVWPNLKRLPDEGISTPTPLLGLFQCWAENPR
FFPLFAKCHKDDSSLTPLPYLVKLLNHEKCSDSVTAVILNIMEKLLTLEDYSATNKEGEK
TVEPLPLSSHVVPVTKLDSRDGKYQQNYGSALLVPHLDSLLQSMKVMISKLGKGRCVTHR
DLTILTKLTEWLTNKDISNDLLSLIIPLIVKKHIKKEDKICQLLITCSYLLPVIDSSIQY
LRPLVTQLGCLKSREARDALCQAITAIAMTNPDYKTLADAAADLNSWNPKMVEEIDFERR
LSRYQQLTEYCKTQQCLNKVDVDFCQLLLYNNMFVICHVEDSSLRDLSSVCLNEVTDMLA
RLQPTHPSEFKQLMVDRFLPLIKLGLQSEKEVVRIEIISVLRLMVHKCHEYIDTLKDLYK
LADEIDEDSDFFSNMGHIQRHRRARALGKLADALNNGTLSFTTQTVTDFLMPLVTSYLFK
DMYAKEDYLISSSVNCIGAFAKLLPWHPYQKMLRNYLSVLFKEDLKHLKLGVRLLDAVLN
GFHEDVEELDIAMKKKSVKYDSASQSVQKNEQNMSEVGESVEEDGEDDHSMRIVEDSVSK
PQKIYCTLVNTIIPQIQSTLAAKTKAETEHKLNKSRYPEDEDIKRIPLAFALIKLLKKLP
RKVLNANVNNVLMKMITFLKSKAESIREESRNMLVKIMVELGGRYLPWLVNDLQSILTSG
FQAHVLVYTLHSVLSQLRPVLTPKDVDACMAQMVNICKEDILGLQAEEKQVIQITSKVKE
ARSDKGYDILCFTAEFISADRLRDIILPLKDVLADTQDKKVVNKMTRCLTEIAKGLEKNE
NISITHKSIFIYGILNEKLTEITADKTLGKLANKKGIQRADSFLLQPEPKRTRLNPKTSM
KATAHVLIEFALHLLCNLMKKEKLIPKELEHQKLLEPYVSVLARCINSEYPEVSLQALKC
VTCIVKFPLLTLQKELKNICAQMFIILDKFSSPELAKGKIYDLVQFSFKTLALILKTVEF
YLLNEEEVRVLLQYVEGNLEDRSQQQTAFIVLQAIVARKIDAPELHELMKHVREMSITCG
RQYALQQARITYYTYLLTYPMKPKRVEANVLYFLGNVSYTHEEGRLSATTMINAIIANFP
IKVFSKAMETSLWFKLSEQMLKDESKENLFLLHKALKTLFQRSQRKEMLIELCMKLLEEN
DGNAASELIGIQLASKALNAFLDIPVKQLPNSLLSCVTPQIIKLISPSRYRTQLGISNEQ
DEFDEVDMDVHLRQIDTTLSALLEVLTKLVSTFLSHTEWNKHVNECMWDFVQAHLQYPHI
QVRLSAAGLIGHLLAAHPIEGESSPSLAVSTERARSLVLDLCELLRTQASAGIPLVMQLS
LTVIRNLIYLVRHSCKVSLVLKSKKESTAEGESENIRNENQSSGKETIVPSAVWVIRRVG
DMAYEELQKSGKDYTVVREALLNLMAGLVVAAGDIVKAPTLLTYMVKHLVRELSDEHVPK
SLAARTQEVAALVKECVGLETYTRYFTAAQVVLSKKRWERRAQDHQQRAINPHLAVKKKK
KKQESFKESKKRRTADRRGKVVEKKNVTLRRHAVVMV
NT seq
8394 nt
NT seq
+upstream
nt +downstream
nt
atgaaggaaaaaccccaacgacaagcccacaaatctacaaacacctttactttccgaggg
tttggagagaaagtaagaaatctcaaagttagtgctaggaaattccttctacagcgtcca
caaaccgaagatggcgagagtgtcaccatctttttccaaacccttctgaaatgcagagaa
gtcaatctcaccgaagctttccaggcatttcagaatgacctgggtggagacattcagact
acagttcaactggttcatcaagaaaagcatgttgctaaatgcctggccgaccatttggcc
acaccaaactctctggctttgcaggcacttctagaccttttggtagcctttgcaaatgac
attcctcaagagttctaccagcatcacttttatgaatttttactaagactggtttcacaa
ctttcaactaaggaccctgaacagatagagtctgtgtttctctgtattgtatcattattt
gtagttttacaaaagtatcttcgtgatgacctctatgaattatatcatgttcatcagtat
gcaactttactttcaaaggcacatccatggtatatcaatgagcttgctgcccagagtctc
gcatttctcatacggaaaattcccaaaaggaacagctttttggccatagcatttaggaaa
ttaaagaaagatgaaagtcaggtgcaaggtttaggaagacttattgctgcattaataaaa
tctgatgtagcccaacgtttacaaagtgtaactcctcagatattatcttcattacttgac
cttttgggagatgaagacataccaacgagttcagccctggaaactatcgcctatgcactt
aaaattgttgctggtcacatcacagcccaacacccaaataagcataccaagtggcagaca
ttgtggcaggaggatgctaccatggtatggcctacattatggagaagcatacaattattg
gttcccagtgcgcatttgcctggaaactcctggcatcatcttcatgctgtcttacaagtg
atagaggttttagtgagttacaaacatggtgtacttctggttgatgtttctgatgcctta
aatcagtgcaaaactatggttcaaatttctcttccagacagtgttggtggtactgttttc
aatatttttagcatcttgcttctgtcatctcatcatcagattactagctcaactcttaaa
gatgtagtatcagaacttttaagttctcattactctcatgtggttaaattcaatgctata
aagcagctagttgatcatataagatttgacacagagatcttaccactggtattgcattac
ctgaacaatttggtaagaactagtgaagtggaagatattgacaaagaagtgctgtccatg
cttgcatttcttgtgcagcataagcaaccaccatgcagcacaggaatggatctggactcg
tggagaaaatacccgctggatttctcgcgtacactttcacctgttaagggcgtttgtgag
aaggacattccatcattaattgaaaacaggttaagcaaagggctaatggaagatctatca
aatttagaagagttgctgttgtgcttgttgtgtttgccacatgtgtcacccctggactac
caagatgtgactccataccttacttggattctcagtgatgcgattgaaatattaaatgat
aagactgagaaagttattgatgatgataaaactgtagctgcaaaaaagaaaggaaaatca
gagactgaggctccaaatcttactattgacttaaatattaaatataacatcaatttgaat
agtaggaagattttgtttttagtagcagctttgatcgaggtgatgttgcatacattaacc
ggtgaagattttctggccagcttaagccaatatcagatattagaagttttaaaggtaaag
caacaatatagagagaatgtctatatcctcaaggcaatagatttgcattttactgttgca
tcctcagaggatgattctgacatcatgaatgaaatattttttaaggatatttattatatt
cttgcaccagctttgtgctcggccaaccctcaagttcgtttattggttactcatatattt
tcattattcccagttaccttaccaccaccaccagagaatatgggaattgttgaaaacatg
ttccaaattatgctgaaggcagaatgtgtggaagtgacaccttgggcttacaaggatcgc
ttacgctacttgtctatggttgatgctgatcacgtagtgtaccatcgtcctatatgtgga
acgtttgatcaggctcctctattattgttgcttggacagttgtatattaattataaagat
gtttggaattcagttctacaaggaatatcaagctatgcccacagtctaaaaactgacatg
ttttggccactctggttctcaagactaaagatagcttcttataataccagccaggtacta
caagggaagacagtagaccctcaggaagatcttttctttgaaaatgagatccttcttaat
gttgttcaaaatgtatcaactcaccatggttttaaaaatttaccactgaaaccagattat
ttaaattacagagacttactctggagagcaatgaaaaagttccctgatatctgtgaagca
aaaagtagggatcttgtacctttgttttttaattttcttgaagaggaactattccctgca
gactttactgtggctccaacacaaaatctttgtgtcagaagcatttcgaacactgcagtc
accagtgaagaccttagtaactctgcattgagagatgcaagttttcatcagaatgtagag
aagagttatgaagaaaataaaatagatcattcaactccaagaagggcacccattaaatca
ctctgtgaacaattaacagttttttcacagtttcacaacccacgaatgttgtttcagaca
aagaagttagaaaaaatgtataaagaattcttaagtcatccatcacctgcacttcagaaa
ttagcccttgattgcataatggcatataatcacccctatctcacaccatataaggaaagt
ttgtgcaaaattttagatgacaagtcatttaaaaatgctctaacccttttcagcattgat
ggatcagagcaatgcgtacaggatgaccaccgcaatgatttaatgcccttccttatgagg
attctgtatggcaaaatgcatttcaaaactggctctaatagttctggcaaggctaagatt
tcagtacgaaaatctgttgtgcttaggtttttggctggtgcaagagaatctgaactaaat
tctttccttgagctatctttcgatgtactgatgagtcatctaaatggcactgccctagat
gtggtgaaccgatgctgtcagaaccttgacataacaaaagttgtacctcttagtagactg
caaggagcactcaccacacttgaaaatataatagaaaagattggaaatatattaacggat
cagattcctttcttgttgaaaattatactttatatagttaacctggtgtcattactacta
gaacaacgtgcagaaataaatgaacgcaacatttcttttcttaagcacctacgacaacaa
gcacagaagagactcctggcatttttccagcagtttagagactaccactggtcactggaa
gaaattgatgcagtattccaagcagctgtttggccaaacctaaaacgcctcccagatgaa
ggaatctccacaccaacgcctcttttaggtctctttcagtgttgggctgaaaaccctaga
ttttttcctttgtttgctaaatgtcataaagacgactcctcactgactccactaccatat
cttgtgaagttgttaaaccatgaaaaatgtagtgactcagtaactgctgttattttgaac
attatggaaaaattgctcacacttgaagattacagtgctacaaataaagaaggagagaag
actgtggagccccttcccttaagttctcatgttgtacctgttacaaaactggattcacgg
gatggcaaatatcaacagaattatggttcggcactgcttgtgcctcacctggatagcctt
ttgcaaagcatgaaagtcatgatctccaaattaggtaaaggccgatgtgtaacgcatcgg
gacctcactattctaacaaaattgacagagtggctcacaaataaggacatcagtaatgac
ttgttgagtcttattataccacttatcgtaaaaaaacatattaaaaaggaagataagata
tgtcagctacttataacttgctcttacctcttgcctgtaattgacagttcaattcaatat
ttgaggccacttgttactcagcttggttgcctgaagagccgtgaagcacgagatgctctc
tgtcaggccattactgctatagccatgactaatccagattacaagacacttgcagatgca
gcagctgatcttaattcttggaaccctaaaatggttgaagaaattgattttgaacgacga
ctaagtcgataccagcaattgactgagtattgcaaaactcaacagtgtcttaataaagtt
gatgtagacttttgtcagcttttgttgtacaataatatgtttgtaatatgtcatgtagaa
gactcatctttgagagacttgtcaagtgtttgtttaaatgaagtaactgacatgcttgct
cgactgcagccaactcatccttctgaattcaaacaactcatggttgatagattcctgcca
ctgataaaacttggtcttcaaagtgaaaaggaagttgtgaggatagaaattatatcagtt
cttcgcctaatggtacacaaatgccatgaatatatagacacactaaaggatctttataaa
ctcgcagatgaaattgatgaagactctgatttctttagcaacatggggcacattcagaga
cacagacgagcccgagctttgggaaagctagcagatgcattaaacaacggcaccctttcg
tttacaactcaaactgtcacagatttcctaatgccattggtaacatcatatctattcaaa
gatatgtatgcgaaagaggattatttgatatctagctcggtaaattgcattggagcattt
gctaaactcctaccttggcatccgtaccaaaaaatgttacgaaactacttgagtgtgttg
ttcaaagaagatctcaagcatctcaagcttggagtaagacttttagatgctgtacttaat
ggctttcatgaggatgttgaagagcttgatattgctatgaagaagaaatcggtgaaatat
gatagtgcctcacaaagtgtgcaaaaaaatgaacaaaatatgtctgaagtaggagaaagt
gttgaagaggatggagaggatgatcattcaatgagaatcgttgaggactccgtaagtaaa
ccacagaagatctattgtacactcgttaacaccatcattccacagattcagagtaccctg
gctgctaaaacgaaagcagaaacagaacacaaacttaacaaaagtagatatcctgaagat
gaagatattaaacgtatccctcttgcatttgcattaataaaactcctcaagaaactaccc
agaaaagtacttaatgccaatgttaataacgtacttatgaaaatgattactttcttaaaa
tccaaagcagaaagtattcgggaagagtctcgcaatatgcttgtaaaaattatggttgaa
ctaggtgggagatatcttccttggttggtaaatgatttacaaagtatcctcaccagcggt
tttcaagcacatgtattggtttacaccttgcattcagtgttgtctcagctacgcccagtt
ctgaccccaaaggatgtggatgcatgcatggcacagatggtcaatatttgcaaagaagat
attcttggtttgcaagcagaggagaaacaagtcattcagataaccagtaaggtaaaagaa
gcacgaagtgataaaggctatgatatcttatgctttacagctgaattcatatcagcagac
cgccttagagatattattctgccactaaaggatgtgttagctgatacacaagacaagaaa
gtagttaataaaatgactagatgcttgactgaaattgctaagggactggagaagaatgaa
aatatatctattactcataaatccattttcatatatggaattttaaatgaaaaattaact
gaaataacagctgacaagactcttggaaaactagcaaataagaaaggtattcaaagagca
gactcattcctgcttcaacctgagccaaagagaacaaggcttaaccccaaaacgtccatg
aaggcaactgctcatgtactaattgaatttgcattacatctcctctgtaatttaatgaag
aaggaaaaactaattccaaaagagcttgagcaccagaagctgttggagccatatgtctca
gtgctggcacgctgtataaattctgaatatcctgaagtgagtttacaagcactgaagtgt
gttacttgtatagttaaatttccccttcttactctgcagaaggaattgaaaaatatttgt
gcacagatgtttataatcttggacaaattttcttctccagagcttgctaagggaaagatc
tatgatcttgttcagttttcttttaagaccttggctttaattcttaaaacagttgaattt
tatttgttgaatgaagaagaggtgcgtgtgctgttacagtatgtagaaggaaatcttgaa
gaccgtagtcagcaacagacagcttttattgttctccaggctattgttgcaagaaagata
gatgctcctgaattgcacgagttgatgaaacatgtccgagaaatgagtattacatgtggt
cggcaatatgcattgcagcaagcacgtatcacttactatacataccttctcacatatccg
atgaagccaaaacgtgtggaagcaaatgtactgtattttcttggtaatgtatcatataca
catgaggagggtcggttatctgccacaactatgatcaatgctattattgccaactttccc
attaaagtgtttagcaaggcaatggaaacaagtttatggttcaaattatctgaacagatg
ttgaaagatgaatctaaagaaaacttgtttttgttgcataaagctttgaagacactcttt
cagagatcccaaaggaaagaaatgttaattgagttgtgtatgaagcttttagaagagaat
gatggaaatgctgcatcagaattaataggtatacaattggcttctaaagctctaaatgcc
tttcttgacatacctgttaaacaactaccaaatagtcttttgtcatgtgtcactccacaa
ataatcaagcttattagtccatcaaggtaccgtactcagcttggtattagcaatgaacag
gatgaatttgatgaggtggacatggatgtccatcttcgacaaattgataccactttatct
gctcttctggaagtgctgaccaaacttgtaagcactttcttaagtcatacagaatggaat
aaacatgttaatgaatgtatgtgggactttgtgcaggctcatttacagtacccacatata
caggtgagactaagtgctgctggcttgataggtcatctattagctgcacaccccatagag
ggtgagtcatcaccctcacttgctgtttcaactgaacgagcacgctcccttgtattagac
ctttgtgaacttttgcgaacacaagcttcagctggcattcctcttgtgatgcagttatca
cttactgtcatcaggaacctcatatatcttgttcgccattcatgtaaagtgtcattggta
ctaaaatctaaaaaagagagtactgctgaaggtgagagtgaaaatattaggaatgaaaac
caatcttcagggaaagagaccattgtccctagtgcagtgtgggtcatccgtcgtgttggt
gacatggcttatgaagagctgcaaaagagtgggaaggattatactgtagtgcgtgaagca
ttgttaaaccttatggctggtctggttgttgcagctggagacatagtaaaagcaccaact
cttcttacttacatggtaaagcatcttgttcgtgaattatctgatgagcatgttcctaag
tctcttgctgcaaggacccaagaagttgcagcactagtgaaggagtgtgttggtctagaa
acttacactcgttactttactgccgcacaggttgtactttccaagaaaagatgggagagg
cgtgcacaggaccaccaacagcgtgctattaatccacatcttgcagtgaaaaagaagaag
aagaagcaagaatcatttaaagaatcaaaaaagagaagaactgccgacaggagagggaaa
gtagttgagaaaaaaaatgtaactttaaggcgccatgcagttgtcatggtataa
DBGET
integrated database retrieval system
