Procambarus clarkii (red swamp crayfish): 123747972
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Entry
123747972 CDS
T07930
Symbol
HDAC1
Name
(RefSeq) histone deacetylase 1 isoform X1
KO
K06067
histone deacetylase 1/2 [EC:
3.5.1.98
]
Organism
pcla
Procambarus clarkii (red swamp crayfish)
Pathway
pcla03082
ATP-dependent chromatin remodeling
pcla03083
Polycomb repressive complex
pcla04330
Notch signaling pathway
pcla04350
TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:
pcla00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
123747972 (HDAC1)
03083 Polycomb repressive complex
123747972 (HDAC1)
09130 Environmental Information Processing
09132 Signal transduction
04330 Notch signaling pathway
123747972 (HDAC1)
04350 TGF-beta signaling pathway
123747972 (HDAC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pcla03036
]
123747972 (HDAC1)
Enzymes [BR:
pcla01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
123747972 (HDAC1)
Chromosome and associated proteins [BR:
pcla03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class I HDACs
123747972 (HDAC1)
HDAC complexes
Sin3A-HDAC complex
123747972 (HDAC1)
BRAF-HDAC complex
123747972 (HDAC1)
REST complex
123747972 (HDAC1)
SHIP complex
123747972 (HDAC1)
MiDAC complex
123747972 (HDAC1)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.6)
123747972 (HDAC1)
Heterochromatin formation proteins
Other heterochromatin formation proteins
123747972 (HDAC1)
Chromatin remodeling factors
NuRD complex
123747972 (HDAC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
Motif
Other DBs
NCBI-GeneID:
123747972
NCBI-ProteinID:
XP_069194956
LinkDB
All DBs
Position
40:complement(22725876..22764382)
Genome browser
AA seq
481 aa
AA seq
DB search
MSTTPHSRKKVCYYYDSDIGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKAT
QDEMTKFHSDDYIRFIRSIRPDNMNEYNKQMQKFNVGEDCPVFDGLYEFCQLSSGGSIAG
AVKLNKQACDIAVNWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDIHHG
DGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNFPLRDGIDDESYESI
FVPILTKVMETYQPSAIVLQCGADSLSGDRLGCFNLTLKGHAKCVEFVKKYNLPLLLLGG
GGYTIRNVARCWTYETAVALSTDIANELPYNDYFEYFGPDFKLHISPSNMANQNTPEYLD
KIKTRLFENLRMLPHAPGVQSIAIPEDGVAEESEDEDKASPDERISIRASDKRIAPDNEY
SDSEDEGDGRRDERSFKPKKKTKTDEAAANNGAGDDKKEASVTKDDKSGTQVGPNETKVE
S
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atgtctactacacctcacagcaggaaaaaagtttgctactactacgacagtgacattggt
aactactattatggtcagggccacccaatgaagcctcatagaattcgtatgacacataat
ctacttttaaactatggcctctacagaaagatggagatatataggccgcacaaagcaaca
caagatgagatgaccaagtttcacagtgatgactatattagatttattcgatccatccga
ccagataacatgaacgaatacaacaaacagatgcaaaaattcaatgttggagaggattgt
ccagtatttgatggcctgtacgagttctgccagctgtcgtcgggtggttccatcgctgga
gctgtgaagctaaataagcaagcatgtgatattgctgtcaactgggcgggtggtcttcat
catgccaaaaagagtgaagcatcagggttttgctatgtcaatgatattgttttagcaata
ttggaactgctcaagtaccaccagagagttctctacattgatattgacattcatcatggt
gatggtgttgaagaagccttctacactactgaccgagtaatgaccgtttccttccacaag
tacggagaatatttcccgggcactggtgatcttagagatatcggtgcaggcaaaggcaaa
tattatgctgtaaactttccgctaagagatggcattgatgatgaaagttacgagagcata
tttgtacctattctaacaaaggtgatggagacttaccagccgtctgctattgttcttcag
tgtggcgcagactctttatcaggagacagacttggttgcttcaatctcacattgaaagga
catgctaaatgtgtggagtttgtcaagaagtacaatttaccacttctactcttgggtggc
ggaggatacacaattcgcaatgttgcaaggtgctggacatatgaaactgctgttgcatta
agtacagatattgctaatgagcttccatacaatgactactttgaatattttggaccagac
tttaagctgcacataagcccttcaaacatggcaaaccaaaacacaccagaatatttggac
aaaattaaaacaagattatttgaaaatttgagaatgcttccacatgctcctggagtgcaa
agcattgctatcccagaggacggtgtagcagaagaaagtgaagatgaggataaggccagt
ccagacgaaaggatatctattcgtgcttctgataaaagaattgctcccgataatgagtat
tctgattccgaagatgagggcgatggccgtagagatgaaagatcgtttaagccaaagaag
aagacgaagacagacgaggccgctgctaacaatggtgccggagacgacaaaaaggaagca
tccgtaacaaaagatgataagagtgggacacaggtgggaccaaatgaaaccaaagtagag
tcttga
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