Procambarus clarkii (red swamp crayfish): 123749782
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Entry
123749782 CDS
T07930
Symbol
Patr-1
Name
(RefSeq) protein PAT1 homolog 1 isoform X1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
pcla
Procambarus clarkii (red swamp crayfish)
Pathway
pcla03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcla00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
123749782 (Patr-1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcla03019
]
123749782 (Patr-1)
Messenger RNA biogenesis [BR:
pcla03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
123749782 (Patr-1)
mRNA degradation factors
5'-3' decay
Decapping complex
123749782 (Patr-1)
SSDB
Ortholog
Paralog
GFIT
Other DBs
NCBI-GeneID:
123749782
NCBI-ProteinID:
XP_045587861
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Position
4:complement(45270477..45289563)
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AA seq
884 aa
AA seq
DB search
MSVPKAVNEGQNVLPELHTQQLFSCGVLCGPGEHRRRRGTTEFGIDTARGLRESGSHTSC
VIVPEDGALEVGLNEDEEYDALNDETFGSAAVDGDWEECHEQMASLTEAGRTKIKQQELH
NALRQGDVCLAEEFKHLGLRKYDNPGGRNLTQSSMPINIIGYQSVPASRTHIGSSLLVGP
DLPGSPSNSIWTPSPGVDKLRPVIQHSPSNGMGHTLGQIPHGLAQPGISPSLGLPTIKTV
AEVEEEMKLQHARSQSSFSLQQALRAEDLERELARQTASKSQQQQQGLSSFLQQSAPFNL
QRQGSFTGGMPNNPSQFNRRFQRPFPNQGSYPGSMQQYSHQQHPYQQQQQRFVNCGGFPG
NGTKNFSQPPPQLPQTHANQTQDCYSSYHHHHNNYHSNFQQQQQQQQHQQQQQQQQSYHH
NRNPDGRYINHNGYDQGRNGNGFDRRNYERKPYDQSRSFDQGKNQYDRTGNSREDYSSHP
GRIRRDSEAEWEEWHRIREQDEYCGLMTPREKGWLKYIQAMQLHSDSPYQDDYYYVMYSV
KQQRKREEEVIEIDGLQLLLPDRGKDGGREYEPPRLENSLGKLQVVSVNAPRKIIDLQVV
HLDPSHPTTSLQREMRKHRHLLLYVEKLFNVMMELDDLERKIRHLPDCPTRDLFKSKSRQ
LASRLWSSVTSTPERLVQLLCIRKGKSLLCRLISWLGESEHEKLVMNILQNMPLLAKKDA
HDQHLALFWPITDRLVASSSHDRMIDLAAALNTQGTTPHKTNLASALCNKYGVSLIMALL
VRGEHLQSTLGGCDEWQELLLAVINGLATVSDTTLKTSSDGSKASTEIPQALPSVALAAS
PYRPGQHLARCTKAEPQRLKASQDKMALLEVTHTKPRCQSPVKS
NT seq
2655 nt
NT seq
+upstream
nt +downstream
nt
atgtcggtgccgaaggctgtgaacgaaggtcaaaacgttcttcctgaactccacacacag
caactgttctcttgcggtgttctctgtggccccggagaacacaggcggagacgaggaacg
acggaatttggtatagatactgctagaggactgcgagagagtggttctcacaccagctgt
gtgatagtgcctgaggatggcgcccttgaagtagggctcaatgaggacgaagaatatgac
gctcttaatgatgaaacgtttggttcggcggcagtggatggggactgggaggagtgtcac
gaacagatggcatctttaaccgaagctggacgtacgaagattaaacaacaggaattgcac
aatgctttacgacagggagatgtatgcttggctgaggagttcaaacatttgggccttagg
aaatacgacaacccaggtggcagaaatttaacccaaagtagcatgcccatcaatatcatt
gggtaccaatctgttccagctagtcgtacccatatagggtcgtctttgctcgtgggacct
gatctaccaggctctccgtccaatagtatatggactccctcacctggtgtagacaaatta
cgaccagttattcaacactctccgtctaatggcatgggtcacactttaggacagattcct
catggactcgcacaacctggcatctctccatctttgggtcttccaacaatcaagaccgtg
gccgaggttgaggaggagatgaagcttcagcacgctaggtctcagtcatcttttagtctc
cagcaagcactgagagctgaggacttggagagagagctggctcgacagacagctagtaaa
tcgcaacagcagcaacaagggttaagcagcttcttacaacagtctgcaccattcaacctt
cagaggcagggatccttcactggaggcatgccaaacaaccctagtcagtttaatcgtcgc
ttccagagacccttccctaatcaaggaagttatccgggatctatgcaacaatactcgcat
cagcaacacccatatcagcagcaacaacaacgctttgtgaattgtggaggattcccagga
aatggtactaagaacttcagccagcctcctccacagctgcctcagacacatgctaatcag
actcaagattgttattctagttaccatcaccatcacaataattaccatagtaactttcag
cagcagcagcaacagcagcaacatcagcagcagcaacagcagcagcaaagttaccaccat
aaccgtaatccagatggccgttacataaatcacaatggctatgaccaaggtagaaatggc
aatggctttgaccgcagaaactatgaaagaaaaccttacgatcagagccgcagctttgac
caaggaaaaaatcaatacgatcgaactggcaactctagagaagattattcatcgcaccct
ggacgaattcgacgagacagcgaggcagagtgggaggaatggcatcgtatacgggagcaa
gacgagtattgtgggcttatgactccacgagagaaaggatggctgaaatatatccaagcc
atgcagttgcactctgatagtccatatcaagatgattattattatgtgatgtatagtgtt
aaacagcaacgcaaaagggaggaagaagtgatcgagatagatggtctacagttactcttg
ccagatcgtgggaaagatggaggaagagagtatgaacctccacgacttgaaaactctcta
ggtaaactgcaagtagtaagtgtaaatgccccgagaaaaattattgacctgcaagtggtg
catctcgatccttcgcatcccacaacatctctgcagcgcgagatgaggaaacacagacat
ctgctcctgtatgttgaaaagttgttcaatgtaatgatggaattggacgacttggaacga
aaaattcgccacttgcccgactgcccaacacgtgatctatttaagtccaagtcccgtcag
ctggcttctagactttggagtagtgtaacatcaacaccagaacgacttgtgcagctatta
tgtatacggaaaggaaagagtttgttgtgtcgtctaataagctggttaggggagagtgaa
catgaaaagctggtgatgaacatattgcagaacatgcccctcttggctaagaaagatgca
cacgatcaacatttagcgctcttttggccaattacggatcgcctggttgcatcttcctcc
catgaccgcatgattgacctggctgcagctctcaatactcaaggaacgacaccacacaag
acaaatttggcgtcggccttgtgtaataagtatggtgtgagtttgataatggctctattg
gtacgaggagaacaccttcagtcaactcttggaggttgtgacgaatggcaagaactacta
ctagcagtcattaatgggcttgccactgtctcggacactacactcaagacttccagtgat
ggcagcaaggcctccacagaaattccccaagcccttccctctgtagctcttgcagcttca
ccttaccgccctggccagcatctagcaagatgtactaaggcggaaccccaacgtctcaaa
gcctcccaagacaaaatggccctccttgaagtcacacacactaaaccaaggtgtcaaagt
ccagtcaaatcttaa
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