Procambarus clarkii (red swamp crayfish): 123750308
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Entry
123750308 CDS
T07930
Name
(RefSeq) collagen alpha-1(XV) chain isoform X1
KO
K06823
collagen type XVIII alpha
Organism
pcla
Procambarus clarkii (red swamp crayfish)
Brite
KEGG Orthology (KO) [BR:
pcla00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pcla04147
]
123750308
00535 Proteoglycans [BR:
pcla00535
]
123750308
00536 Glycosaminoglycan binding proteins [BR:
pcla00536
]
123750308
Exosome [BR:
pcla04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
123750308
Proteoglycans [BR:
pcla00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
123750308
Glycosaminoglycan binding proteins [BR:
pcla00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
123750308
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Endostatin
Collagen
Fz
Collagen_trimer
Motif
Other DBs
NCBI-GeneID:
123750308
NCBI-ProteinID:
XP_069156798
LinkDB
All DBs
Position
44:complement(18829637..18999463)
Genome browser
AA seq
1529 aa
AA seq
DB search
MFLFAVTNPLENLIQLGVSLTPGGPGSTNLSLYYTDGERHMTSQTIASFLVPQFTGSWTR
LSLKVTEEEVQLWYNCQMYNGLLVRRVPLQLVFDSASTLYIGQAGGIFKGEFEGALQELK
IYNVPDLAQVQCDNNFAYIGSGSGDGRSDVSVMDDYFPLDMEDDDESSLPRLEGSGVDLA
GAPPPLPPPPPLHGAKRRKGSDCTTDHCQDVGVWACSGVEWTRAIFPNLLGQGPREAEPT
ASQFWHQLHTINCSREFRFVVCGLLAPPCAPGLTKPLPPCREVCDSALRSCLQIMEKYYL
EWPKDAFTCQDLPYSHQEPCLRYHQGQVVFPPGVNTDCSQEDYNYDNYDYDGYESVSTPP
SLHEDYLASGSGDGPDADLGFISSGERETYNEIYDLFDMPQDINITTITYTPSTTPAPPI
TTLTSPTTSSTPPTTSIPPTTSSTPLTTSPTSPTTSPTPLTTSPTPHSTTTPPEAAATAS
RSPTSWSPSTARPTDTSTPRIRFAPTPTPSMALPTRLPATSTDHGTSYLHANEIINEEFS
LPGQKGEKGERGPKGPPGESVAGPPGPPGPPGLPGPPASFPHKSLTQSVPDLGSGAGEDF
IPEPDFSSGRRGPPGPRGECFCNETRLLASVIAQIPRGLPGPEGKPGRDGVSGIPGTPGR
PGPPGERGAPGEKGDKGDRGHHGSRGPEGVQGAKGESGIDGAPGLQGERGPQGPPGQPGW
GNSGYDVDGGLAVAPARPGSPGSPGEKGEPGAAGSRGPRGYAGTKGEKGNPGSDGDKGER
GSNGRQGLPGPKGEPGASGMNGAPGPPGFMSSPGAKGEKGERGVPGMGLPGPPGPPGGLS
EKDRRIILQQVVETLENKNTVNGHSGSGINIWDTSGGLPYNGVSDDEDLYRSEGSGGVVY
NPFHPKEGKGVRGPPGPPGPQGVQGIEGIQGLMGPPGGTGPPGQPGLDGLPGSRGEKGEP
GIAGAKGEVGYPGSKGEKGDRGEAGPPGPISFLVQPDGTNITIVKGDKGDRGRRGKRGKR
GPPGPAGALGDLGLPGWPNMTQIGSQGPPGPPGPPGIGRKGEPGAPGPPGPPIGGFLNGI
LGSSSSDVAGMSSSGGSVVVGPIGPAGPPGPSGAPGPPGPPGPPGSSQSSDSQMYIPVPG
PPGPPGPPGPPGVPGLSMEGPQGPRGSTGSPGHGLPGNPGPPGPPGQPGYGQKGGGYGGI
EELRRITSHRGNQGPPGVPGPPGKDGVESAGPTTSIVPGAVTFPDKAAMLKMSEMSPIGT
LAFILDEEVMLVRIGAGWQYISMGSVVPLPTTTPAPPTTTTITQTPAAHHPPLQVDSLVN
VDGPRLRLAALNQPYSGDMHGVRGADYACYRQARRAGLKGTFRAFLTSRVQNLDSIVRYS
DRDLPVVNIKGEVLFNTWRGIFSGSGGIFSQKPRVFSFDGKDVLASAIWPQKYVWHGSDL
LGERALSSYCDAWNSASQDVIGLASSLLKNRLLAQERLGCHNSFIVLCIEATSQARFRRK
RHAGTLEPELTEDEYHEHLKSLDLIEEEV
NT seq
4590 nt
NT seq
+upstream
nt +downstream
nt
atgttcctcttcgccgtgaccaaccccctggagaacctcatccagctgggggtctccctg
acccctggcgggccgggctccaccaacctctcgctctactacaccgacggggagcggcac
atgacctcccagactatagcttccttcctcgtcccgcagttcaccggctcttggaccagg
ttgtcgctgaaagtgacggaggaagaggtgcagctgtggtacaactgtcagatgtacaat
ggtctcttagttagacgagtcccccttcaactggtgttcgactcggcctccactctctac
atcggccaggcgggaggcatcttcaagggcgaattcgagggggcgctgcaggagctcaag
atctacaacgtgccggacctggcccaagtgcagtgtgacaacaacttcgcgtatattggc
tctgggtctggtgatggtaggagcgatgtcagtgtcatggatgactacttcccgctggat
atggaggatgatgacgagtcgtcattgcctcgactggaggggtcaggagtggatctggcg
ggggcgccgccccctctacccccaccaccaccactacacggagccaagcgacggaaaggg
tcagactgcaccacggaccactgtcaggacgtgggcgtgtgggcgtgcagcggcgtcgag
tggacccgcgccatcttcccaaacctgctggggcaggggcccagggaggccgaacccacg
gcctctcagttctggcatcagctccacaccatcaactgcagtcgcgagtttcggttcgtg
gtgtgtgggttgctggccccgccctgcgcccccggcctcaccaagccgttgcctccgtgc
agggaggtgtgcgattctgcgttgagatcttgtctccaaattatggaaaagtattacctc
gagtggcctaaggacgcgttcacctgtcaagatctgccctacagccaccaggagccctgc
ctcaggtatcaccagggccaggtcgttttccctcccggggtcaacacagactgctcccaa
gaagactataactacgacaactacgactatgatggctacgaatcagtctccacgccaccc
agtctccacgaagactacctcgcatcgggctcgggagatggccctgacgctgacctgggc
ttcatttcctcgggagaacgtgaaacatacaacgaaatctatgatttgtttgatatgcct
caagatataaacattaccacaatcacctacacaccatccaccacgccagcgccgcctatc
accaccctaacatcgccaaccacctcctcgacgccacctaccacctccataccacctacc
acctcctcgacaccacttaccacctcccccacatcacctaccacctcccccacaccactt
accacctcccccacaccacacagcaccactaccccgccagaggcagcagcaacagcctcc
cggagtcccaccagctggtcaccaagcactgctaggcccacagacacctccaccccaagg
atcaggtttgctcccaccccgactccctccatggcccttcccacgcgactcccagcgacc
tccactgaccatggcacgagttacctccatgccaacgagattattaatgaagaattcagt
cttcctggtcagaaaggcgagaaaggtgaaagaggacccaagggtcctcctggtgagtct
gtggcaggcccaccaggcccaccaggacccccaggtcttccgggaccacctgcctctttc
cctcacaagagcttaactcaaagtgtaccagacttggggtcaggtgctggcgaggacttc
atccctgagccagatttcagcagcgggcgtcggggtcctcctggtcctcgcggtgaatgc
ttttgcaatgagacacgcctgctggcttctgtcatagcccagataccacgagggctacca
gggcctgaggggaaaccaggtcgagatggtgtatcggggatcccaggaacgccaggtcgg
ccaggcccaccaggagagcgaggtgccccaggggagaagggagacaagggtgacagaggt
caccatggcagccgtggtcctgaaggggtgcagggagctaagggcgagtctggcattgat
ggagccccaggcctccaaggagaacgggggccgcagggccctcctggacagcctggctgg
ggcaattccggctatgatgttgatggtggcttagcagtggccccggcccggccagggtct
ccaggatccccaggagagaagggcgaacctggagcagctggaagcagagggcctcgagga
tatgctggaaccaaaggagagaagggcaaccctggcagtgacggggataagggagaacgg
ggatctaatgggaggcaaggactaccaggccccaagggtgagccaggagcctctggtatg
aacggtgccccagggcccccagggttcatgtctagtccaggagccaagggtgagaaaggt
gagcgtggggtgccgggaatgggtcttcctggtcctcctggaccaccgggaggactctca
gaaaaggaccgcaggatcatcctacaacaggtagtggagactctggaaaataaaaataca
gtgaatggccattcgggcagcggcatcaatatttgggacaccagtggaggtcttccttat
aatggagtcagcgatgatgaagatctctaccgtagtgagggctccggaggtgtcgtgtac
aacccgttccaccctaaagaaggaaaaggtgttcgaggtccccctggcccaccaggtcct
caaggagtccagggaatcgagggcatccaaggcctcatgggtccccctggaggcactggt
ccacctggccagcctggcttggatggtctacctggatctcggggagaaaaaggagagcca
ggaattgctggtgccaagggagaagtagggtacccaggatcaaaaggtgagaaaggtgac
agaggtgaagcaggtccccctggcccaatcagctttcttgtgcagcctgatggaactaac
atcaccatagtgaagggcgataaaggcgaccgtgggaggagaggcaagcgaggaaagcgg
ggcccccctggtccagcgggggcccttggggatcttggtctcccaggatggccgaatatg
acccaaattggttctcaaggtcccccgggacccccaggacctcctggaattggtcggaaa
ggagaacctggggcccctggccctcctggtcctccaatcggtggcttcctcaatggcatt
ttgggcagcagcagctctgatgttgcaggcatgtcatcttctggtggctctgtggtagtg
ggcccaataggaccagcagggcccccagggccatctggagctcctggaccccctggaccc
ccaggtcctccaggaagctcccagagtagtgacagtcagatgtacattccggtacctgga
ccacccggtcctcctggtccaccgggacctcctggtgtgcctggcctgtccatggaaggg
ccccaaggaccacgtggatccacaggatcgccaggccacggtcttcctggtaacccagga
cctccaggtcctcctggtcaaccaggctatggtcagaaaggaggtggctacggtggaatc
gaggagcttcgtcgtattaccagccaccgaggaaaccaaggtccccctggtgtgccagga
ccgcccggtaaggatggtgtggagtcagcgggaccaactaccagcatagtacctggtgca
gtgactttcccagacaaggcagccatgttgaagatgagcgagatgtcacccatcggtaca
ctggccttcatcctagatgaagaggtgatgctggtacggataggggctggatggcagtac
atctctatgggctctgtggtaccactgcctaccaccaccccagcgccacctaccaccacc
accatcacccagacgcccgcagcacaccacccgcccctccaggtggattcactcgtcaat
gtggatggacccaggctccgactggctgcacttaaccagccatacagtggagatatgcat
ggggtcaggggtgctgactatgcctgctacagacaggcacgaagagcgggacttaagggc
accttcagagccttcctcacctccagggtacaaaatctggactcgattgttagatactct
gaccgggaccttcccgttgtaaatattaagggtgaggttctgttcaacacgtggcgtggc
atattctcgggctctgggggcatcttttcccagaagcctcgtgtgttcagctttgatgga
aaagatgtgcttgccagcgctatttggcctcaaaagtatgtgtggcatgggtctgatctg
ctgggagaacgagcactctcatcctactgtgatgcgtggaacagtgcatcccaggacgtg
ataggtcttgcgtcttcccttctgaagaaccgcctgctggctcaggagcggcttggttgt
cataactctttcattgttttgtgcattgaggccacaagtcaggcacgcttccgaaggaaa
cgccatgcaggtaccctcgagccggagttgactgaagatgagtaccacgaacatctcaaa
tcattggacttgattgaggaagaggtttag
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integrated database retrieval system
