Procambarus clarkii (red swamp crayfish): 123754862
Help
Entry
123754862 CDS
T07930
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG7
KO
K14409
protein SMG7
Organism
pcla
Procambarus clarkii (red swamp crayfish)
Pathway
pcla03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pcla00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
123754862
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcla03019
]
123754862
Messenger RNA biogenesis [BR:
pcla03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
123754862
mRNA cycle factors
Common to processing body (P body) and stress granule
123754862
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
Motif
Other DBs
NCBI-GeneID:
123754862
NCBI-ProteinID:
XP_069188874
LinkDB
All DBs
Position
28:complement(1059755..1101104)
Genome browser
AA seq
624 aa
AA seq
DB search
MKTASQLLREAEGLKSRLNNCTQLVGNNEAWAVQHQLQVVCGQLLVHWIESALDHGVERD
LWNLGFRNTITQLQAQAKDKQGSSSEVRDMLSWFLNSASGFYLQLFNQICAEYGLDLPFR
RKDSIYGAVDLNGSTQGKSKASSLKNALYLCQYCLVHLGDLARYRHQAKQAENYYRHAVM
VAPTSGHPYNQLALLEAGRGNRLAAVALYVRAMCVPCPFPGAPANLTQTLSKLLASTSSR
ELSGSTRVTGEEYTNLFLQCHAQLYLHGDAATARHALPTLCSALSTLVATNAFTRTSLIQ
MVLVNLFALNYFSGAVKIKTSEETTTSKKDEEKLEKPRDPKECDGCLHVVEELTVGVLAA
LLLPVHTIRDPDQLMTYPALPAVRLLFEWVHCENGMFMSEAMKNKQQIWPGLCTLVNNLQ
QPLGSFDASKYSEVPLVEDWDLQGFEPLQKMLSKYKYREGLSKPSPEEYNCIRASRLTDI
AKWFAGQDIDGNSVIKICEGSQDAPGGLTFEPMKHSSPPVDEVRALEQLSLQTKPEEKLS
GKRGKVGILKPQGSLERARETREQHEPELPEKSLRITGENEGIKESGVVGGGGTIMSIKV
VSGSGLLQSSPPGQPSQQQQQQQQ
NT seq
1875 nt
NT seq
+upstream
nt +downstream
nt
atgaaaactgctagtcagctcctaagggaggctgagggtttgaagagtcgtctgaataat
tgtacccaactagtggggaacaatgaggcctgggctgtccaacaccaacttcaggtggtg
tgtgggcagcttctggtgcactggattgagtcggccttggatcatggggtggagcgcgac
ctgtggaacctgggctttaggaacaccataacacaactccaagctcaagcaaaggataaa
cagggaagttcaagtgaggtccgtgatatgttgagttggttcctcaactcggccagtggc
ttctacttgcagcttttcaatcaaatatgcgccgagtatggcctcgatttgccatttcga
aggaaagacagcatctatggtgctgtagatctcaatgggtcaacgcagggaaagtccaaa
gcaagcagtctgaaaaatgctctctacttgtgccagtactgcctcgtgcacctcggtgac
ttagcaaggtaccgccatcaagccaaacaagccgagaactattacaggcatgctgttatg
gtggcccctaccagtggtcatccatacaatcaacttgcccttttggaagctggacgaggt
aaccgtctggcagcagtggcgctatatgtgagggccatgtgtgtgccttgtcctttccct
ggtgctcctgctaaccttactcagacgctctccaaattgttggcctccactagcagccgt
gaactgagtgggtcgacaagagtcactggagaagagtacaccaatctctttcttcagtgc
catgcccagctgtaccttcatggagatgctgccactgctcgacacgctcttccaaccctt
tgctctgccctctcgactttagttgcgactaatgccttcaccagaacaagtctcatccag
atggtcttggtgaatctgtttgccctaaactatttttctggagcagttaagattaagaca
agtgaggagactaccaccagcaagaaggatgaagagaaactagaaaaaccaagagatcct
aaagaatgtgatggatgtctgcatgtggtggaggagttgactgtgggggtgttggcagcc
cttctcttgcctgtgcatactatccgtgatcccgaccagctcatgacttatccagccctc
cctgcagttcgccttttgtttgaatgggttcattgcgagaatggtatgttcatgtcagag
gcaatgaagaataagcagcagatttggccaggactctgcacattagtcaacaacttacag
cagcctttagggtcttttgatgctagtaaatattctgaggtgccattagtggaagactgg
gaccttcaaggctttgaaccactacaaaaaatgctgagcaaatacaagtaccgtgaaggc
ctatctaaaccaagtccagaagaatacaattgtatacgagcttcccgacttactgatatt
gcaaagtggtttgcaggacaagacattgatggaaattctgtgatcaaaatttgtgaaggg
agtcaagatgcaccaggtgggttgacatttgaaccaatgaagcactcaagcccacctgtt
gatgaagtgcgtgcccttgaacagctctctctacagaccaagcctgaggaaaagttgtcg
ggaaagcggggcaaagttggcattctgaagccacagggttccttagagcgagcgagggag
acgcgagagcagcatgaaccagagcttccagagaagtcactaaggatcactggagaaaat
gaaggaataaaagaatcaggtgttgttggtggtggtggtactattatgagcatcaaggtg
gtatcaggttctggtctgttacaaagttcacccccaggtcaaccatcacagcagcagcag
caacaacaacagtag
DBGET
integrated database retrieval system
