Procambarus clarkii (red swamp crayfish): 123755854
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Entry
123755854 CDS
T07930
Symbol
me31B
Name
(RefSeq) ATP-dependent RNA helicase cgh-1 isoform X1
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
pcla
Procambarus clarkii (red swamp crayfish)
Pathway
pcla03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcla00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
123755854 (me31B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcla03019
]
123755854 (me31B)
03036 Chromosome and associated proteins [BR:
pcla03036
]
123755854 (me31B)
Enzymes [BR:
pcla01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
123755854 (me31B)
Messenger RNA biogenesis [BR:
pcla03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
123755854 (me31B)
mRNA degradation factors
5'-3' decay
Decapping complex
123755854 (me31B)
Chromosome and associated proteins [BR:
pcla03036
]
Eukaryotic type
Gene silencing
piRNA pathway
123755854 (me31B)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CMS1
DUF460
Motif
Other DBs
NCBI-GeneID:
123755854
NCBI-ProteinID:
XP_045594709
LinkDB
All DBs
Position
43:complement(25983688..26017198)
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AA seq
486 aa
AA seq
DB search
MAGRGWRRGCARPQWWWQGGTDGRRWQDFSIEVGPTKDPRYYTMADMATLPNHTSPMKTM
INSQVVKPGDDKSWKSQIVVPPRDRRKRTSDVTDTKGNEFEDFCLKRDLLMGIFEKGWER
PSPIQEASIPVALSGRDILARAKNGTGKTGAYSIPLLEQIDTSLDHIQAMVIVPTRELAL
QTSHICNELAKHIGVKVMVTTGGTNLKDDIMRIYETVHAVIATPGRILDLMEKKVAVMDK
CKMLVLDEADKLLSQDFKGMLDRVISYLPPERQILLYSATFPLTVEQFMQKHLRSPYEIN
LMDELTLKGVTQYYAFVKERQKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITDLGY
SCYYIHAKMAQAHRNRVFHDFRGGLCRNLVCSDLFTRGIDIQAVNVVINFDFPKMAETYL
HRIGRSGRFGHLGIAINLITFDDRFALHRIEQELGTEIKPIPKVIDPALYVAECHFEDDD
EGNISK
NT seq
1461 nt
NT seq
+upstream
nt +downstream
nt
atggcgggtcggggctggcggcgggggtgtgcgaggccgcaatggtggtggcagggaggg
acagacggcagaagatggcaagattttagtattgaagtaggacccacaaaagatccacgc
tattacaccatggcagacatggcaacattacccaatcatacctcccctatgaaaacaatg
ataaatagccaggttgtcaaacctggtgatgacaagtcttggaagtcacagattgtggta
ccaccaagagatcgaaggaaacggacttctgatgtcacagacacgaaaggcaatgaattt
gaagatttctgtttgaaacgcgacctattaatgggcatctttgagaagggttgggaaaga
ccgtctcccatccaggaggcttccattcctgtagcgcttagtgggagagatatcttggca
cgggctaaaaatggaactggcaaaaccggagcatattctattccacttttagaacagatt
gataccagtctagatcacattcaagccatggttatcgtcccaacacgggagttggctctg
cagactagtcacatttgtaatgagttggccaagcatattggagtgaaggttatggtgaca
actggaggtaccaatttaaaggatgatattatgagaatctatgagactgtacatgctgtc
attgccacacctggaagaatcctggatcttatggagaaaaaagtagctgtaatggataaa
tgcaagatgctggtgttagacgaggctgataaactgctgtctcaagatttcaaaggaatg
ttggatcgtgtcatctcgtacctgcctcctgaaagacagattctcttgtactctgcgaca
tttcccctcacagttgagcaattcatgcagaagcacttaagatcaccatacgaaataaac
ttgatggatgaactaacactgaagggtgttacgcaatactatgcatttgttaaagagcgg
cagaaggtccattgtttaaatacattattttcaaagttacaaatcaaccaaagcatcatc
ttctgcaactcaactcagcgtgttgaattattggctaaaaaaatcactgatcttggctat
tcgtgctactatatccatgcaaagatggcacaggctcaccgcaaccgtgtcttccacgat
ttccgtggtggtctctgcaggaacttggtttgttcagatttgtttaccagaggcatagac
atccaagctgttaatgtggtaattaactttgactttccaaagatggcagaaacttatctg
catagaatcggcagatcgggacgttttggccaccttggtatagcgatcaatctaataact
tttgatgatcgcttcgcacttcaccgtattgagcaagagctaggaacagaaattaaaccc
attccaaaggtcatcgatccagccctgtatgttgcggagtgtcactttgaagatgacgac
gagggcaatatcagtaaataa
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