Procambarus clarkii (red swamp crayfish): 123756871
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Entry
123756871 CDS
T07930
Name
(RefSeq) collagen alpha-1(XVIII) chain isoform X1
KO
K06823
collagen type XVIII alpha
Organism
pcla
Procambarus clarkii (red swamp crayfish)
Brite
KEGG Orthology (KO) [BR:
pcla00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pcla04147
]
123756871
00535 Proteoglycans [BR:
pcla00535
]
123756871
00536 Glycosaminoglycan binding proteins [BR:
pcla00536
]
123756871
Exosome [BR:
pcla04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
123756871
Proteoglycans [BR:
pcla00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
123756871
Glycosaminoglycan binding proteins [BR:
pcla00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
123756871
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
DUF1554
Motif
Other DBs
NCBI-GeneID:
123756871
NCBI-ProteinID:
XP_045596222
LinkDB
All DBs
Position
26:complement(20434699..20510529)
Genome browser
AA seq
1037 aa
AA seq
DB search
MAAEVSKTGKIGAGVVLFLVLAVVAVLAVGSAVGWYDQDVEPPPPPGFKERLDGGNLKPD
HMEPFYDHETPWRAYEDEVIDGQHIDSETSGLFVPQEEWVDEVGVGGRCGCNMSALMRLV
RTQVQRGPPGPPGRDGKPSPPGLSGTPGPQGERGLPGRRGERGDRGEVGAPGPEGLQGPK
GEPGVDGLAGPVGPPGLPGPPGPRGWTWGADDTKTPGWQLHSGYQPAGETVVLEAQGPDL
EAQGPPGTPGAAGPRGPRGYAGPKGDRGHQGLKGQKGEEGPQGPSGRLGNKGTRGPPGVD
GLPGTPGHKGQKGDRGLPGRGRPGPKGAQGDKGSQFYSPEEVRTMVLTSLQVFVDTNPSH
MTDFREIAKKIEVVLPRGADGIPGSPGPAGPKGEEGRQGPTGPPGYPGGPGPVGDAGEQG
PVGRDGQPGQKGETGPPGPIMLANGTLIEIKGQKGDAGVDGERGLRGPQGPPGPPGPPGP
QSGQGPFTAARDTTHAYDVSGIKGDKGERGPPGPPGPPGAGSSAMGRGATYTNGGVFGIM
AQPRPRPGQSDYGHVSILEDDEEGKIGPPGPPGPEGPPGPPGPPGPPGPQAQGTSDPQFI
PVPGPPGPAGPPGTPGSPGSPGTTAFATPRKYGFGPGNSRESTSMFASLPTTPNLGLDLG
SSSPLSFTSRPAMLQAWSRHSRGTLAYVLDDDSLFLRASRGWRQVTLGEVLAPELTPAPP
QRPSTPISVNPNVETLPEELATDHSAGRTWWGEPLTTDTENELWNLKELRVAALNEPWAG
NTRGVSSADYACYRQARTAGLRGSFRAMLSGPRHDVASLVRFADRQQPIINLQGEQVLGS
WRDVVSGEGGQFLEQPRIVSFDGRDVLTDSSWPVKYVWHGSNRYGESLLSHNCNAWSSAS
SSTFGMAAALHSLKLLDQQKVACDNRLIVLCIESSSTLPKRRKRDARDTTWEHSDINRPE
GQDIDPVTSDLEHENNDISGKLAAGASPDCELPTTTYNKENHISHTSESRDEESTTLLVS
SEGLDAPSNLIKDLYVI
NT seq
3114 nt
NT seq
+upstream
nt +downstream
nt
atggcagccgaggtgtctaagacggggaagatcggagcgggcgtggtgctgttcctggtg
ctggcggtggtggccgtgctggccgtgggctccgccgtcggctggtatgaccaagatgtt
gaaccacctcctcctccaggcttcaaggagaggctggatggtggaaaccttaaaccagac
cacatggaacccttctacgaccacgaaaccccctggcgtgcctacgaagatgaagtaatt
gatgggcaacacattgatagcgagacatctgggctgttcgttccccaagaggagtgggtg
gacgaggtgggcgtgggcggccggtgcggatgcaacatgtcggctctgatgcgactggtg
aggactcaggtccagcgtggacccccaggacccccaggcagggacggcaagcccagtcct
cccggactctccggcacgccaggaccccagggcgaacgaggactgcccgggaggagagga
gagcggggagatcggggagaggtaggcgctcctggccctgagggactccaaggacccaag
ggcgaacccggggtcgacggcctggcgggacctgtaggtcctccaggactccctggtcca
ccaggacctcgaggctggacctggggcgctgacgatacaaagacgcctggatggcagctc
cactctggctaccagcctgctggagagaccgtcgtcttggaggcgcaggggccagacctc
gaggcccagggccctcctggcactcctggagccgcagggccaaggggtcctagaggatac
gctggacctaagggcgaccgcggtcatcaaggtcttaaaggtcaaaaaggcgaagaggga
ccccagggacctagcggacgtctggggaacaaggggacccgagggcccccaggagtcgac
gggctgcctggaacccctggccacaaggggcagaaaggtgaccgcgggctgccggggcgg
ggacgaccagggcccaagggcgcccagggagacaagggcagccagttctactctccggag
gaggttcgaaccatggtcctcacttcacttcaggtcttcgtcgacaccaacccctcacac
atgaccgacttcagagagatcgccaagaagatcgaggtggtgctgccgaggggggctgac
gggatcccaggaagtcccggacctgcaggacctaagggcgaggaaggtcgccagggaccc
acagggcccccagggtacccaggcggtccaggacccgtgggtgacgccggggagcaggga
cctgtaggacgtgacggacagccgggacagaagggtgagacaggacccccaggacccatc
atgcttgccaacggcactcttattgaaatcaagggccagaagggtgatgcaggtgtggac
ggggagcgaggcttgcgaggtccccagggtcccccaggaccaccaggaccaccaggacca
cagtcaggacaaggacccttcacagcggccagggacaccacccacgcctacgatgtatcc
ggaattaagggtgacaagggtgagagaggaccccctggccctcccggccctcctggagca
ggcagcagtgccatggggcgaggtgccacctacaccaacggcggcgtcttcggtatcatg
gcccagcctcgccctcgtcctggacagagcgactacggccacgtcagcatcttggaggac
gacgaagaagggaagattgggccacctggacccccagggccagagggacccccaggaccc
ccaggacccccagggccaccagggccacaggcacagggcaccagtgatccccagttcatc
ccggtgcctggcccaccggggcccgcgggacccccaggaacaccaggatcaccgggatca
ccaggcactacggcttttgccacccctaggaagtacggctttggtcctggcaactctcgc
gagagtaccagcatgttcgcatcgctgcccaccactcccaacctcggcctcgacctgggc
tccagctctcccctctccttcacctccaggccagccatgctccaggcctggtccagacac
tcgaggggcactctggcctacgtcctggacgacgactcactcttcctgagggcctcccgt
ggctggcggcaggtgacgcttggagaggtgctggccccagagctgacgcccgccccaccc
cagagaccctcaacccccatctctgtcaaccccaacgtcgagacgctgcctgaagaacta
gccactgatcacagcgctggcaggacctggtggggagaaccattgactacagacacagag
aacgaactatggaacttaaaggagctgagagtggcggcgctgaacgagccgtgggcgggc
aacaccaggggcgtgtcctccgccgactacgcctgctacaggcaggcccgcaccgctggg
ctcaggggctccttcagagcgatgctatctggtccaagacatgatgtcgcctcgttggtc
cgctttgctgaccggcaacagccaatcatcaacctccaaggggagcaggtcctgggctcc
tggcgggacgttgtgtccggggaaggtggacagttcctggagcagccgaggatagtctcc
ttcgacggcagagacgtcttgaccgacagctcctggccggtgaagtacgtgtggcacggc
tccaacaggtacggggagtctctgctcagccacaactgcaacgcctggtccagcgcctcc
tccagcaccttcggaatggccgcggctcttcactctctcaagctgctcgaccagcagaag
gtcgcctgtgataaccgcctcattgtcctgtgtatcgagagttccagcaccctgcctaag
cgtagaaaacgcgacgctcgcgataccacgtgggagcatagtgacattaatcgaccagaa
gggcaggatatcgatcctgtaactagtgatcttgaacatgaaaataatgatatatccggt
aaattagcagcaggtgcgtctccggattgtgaacttcctactacaacgtataataaagaa
aatcatataagtcatacgagtgaaagcagagacgaggaaagcacaacgctactagtgagt
tcagaaggtcttgacgcgccttccaacctcatcaaagacttgtatgtaatatga
DBGET
integrated database retrieval system
