Procambarus clarkii (red swamp crayfish): 123757275
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Entry
123757275 CDS
T07930
Symbol
lt
Name
(RefSeq) vacuolar protein sorting-associated protein 41 homolog isoform X1
KO
K20184
vacuolar protein sorting-associated protein 41
Organism
pcla
Procambarus clarkii (red swamp crayfish)
Pathway
pcla04140
Autophagy - animal
pcla04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
pcla00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
123757275 (lt)
04148 Efferocytosis
123757275 (lt)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pcla04131
]
123757275 (lt)
Membrane trafficking [BR:
pcla04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
123757275 (lt)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_Vps41
Beta-prop_Vps41
WD40_WDHD1_1st
WD40_CDC20-Fz
Clathrin
WD40_Prp19
zf-RING_Vps41
Beta-prop_EML_2
zf-RING_5
WD40
EIF3I
WDR55
PEP5_VPS11_N
Beta-prop_WDR19_1st
zf_RING_Vps8_fungal
zf-RING_11
Beta-prop_HPS5
zf_RING_Vps8
DUF7165
zf-RING_2
TPR_7
Beta-prop_EML
Mcl1_mid
zf-C3H2C3
TPR_17
TPR_GEMI5
VPS11_N
WD40_like
zf-C3HC4_2
Beta-prop_IP5PC_F
zf-rbx1
PHD_NSD
Motif
Other DBs
NCBI-GeneID:
123757275
NCBI-ProteinID:
XP_045596774
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Position
13:complement(26589348..26852912)
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AA seq
872 aa
AA seq
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MEESSASLPSSQDLKDDPQDEEEVETEEGEDSEDEDSEEEEEPKLKYERISGDLREILKK
DGASCISANSKLIIVGTNWGRIHVLDHQGNKVKEFSPHSNPVTMLDMDANGDYIASCSHD
RKVVIQGLYTTENSHSLVMDSPVRSVALDPVYFKPRSGRRFVVGTNKVILYEKALFGQLR
PTILSESSGPARAMKWAGQFLAWATDSGVRVMDMNTKTVITLIKRDHSLALPCDQYPPHL
CWPDDRTLIVGWGDSVKVCRVRDRVTNPSQLAPGPVDLPPHYLEIVYMFTTDFYVCGVGP
LDEHLVVLAYNKQTDLSLASLGVDSRRPQMRVLEPLQGTFEEISKDVLGIRCYQEYKPAN
YHLECLVEDRQFYIVCPQDVVVAKPRSADDRIEWLLEHDKHAEALEVVKTSREVQRYTLL
SVGRVYLDHLMSRGSFQDAAKLCTQILGSDKALWEEAVVRFNCVRQLRVLSPHLPLGHGV
NLDPAVYQMVLLDLLQTDHQGFLQVVQDWPGHLYNVSFVINAVLETLARNTNNMTLLQAL
AHLYSNIDKHDKALAIYLKLKHKDVFHLIARHNLYGCVAKHVVDLMVLDSSATLEICCSH
VDIVPPDTVVFALSSHQQFLYKYLDALFERRRELSKRYHSQLVTLYADLDRKKLLPLLIT
SSSYDLRAALQVCQARCLNAETIHLLARMGNTMEALHIILVEEQDLEWAIRFCKEHDDVD
LWSRLINYALDKPDCVRELLLNIGTHIDPLLIINQIPKGMEIPGLRDALVKILHDYHLQI
ELRTGCQRILVSDSSNLLTKLVSAQNAAHPVYGDTECAACNKRVLNPSRGELPGLVVFAC
RHVYHQDCIPEDSQQDVCLVCRNDKKRLFLTL
NT seq
2619 nt
NT seq
+upstream
nt +downstream
nt
atggaggaatcttctgcatcattgccatcatcacaagatttgaaggatgaccctcaggat
gaggaagaagtggaaaccgaggaaggagaagattcggaggatgaagattcggaagaggag
gaggaaccaaagctaaagtatgaaaggatctcgggggacttgagggaaatactgaagaaa
gatggagcatcatgcatttcagccaactcgaagttgatcatcgttggaacaaactgggga
cgtatccacgtgctagaccatcaaggtaacaaggtgaaggagttcagcccgcacagcaat
cctgtaacaatgttagatatggatgcaaatggtgactatattgcctcctgctcccatgat
cgcaaagttgttattcaaggattgtatacaacagaaaactcgcatagtcttgtgatggac
agtcctgtgcggagtgtggcccttgaccctgtatatttcaaacctcgttccggtcgtcgc
tttgttgttggtacaaacaaggtaattttatacgaaaaggccttgtttggccaactacgc
cccacgatcctaagtgagagtagtggtcctgcgagagccatgaagtgggcaggacagttt
cttgcctgggccacagactctggtgttcgagtcatggatatgaatactaagacagtcatc
actctaattaaacgtgatcacagccttgccctgccgtgtgatcagtatcctccacacctg
tgttggcctgatgaccgcacactcatagtgggctggggagactctgtcaaggtgtgccgg
gtgagggatcgggtcactaatccttcccaattggctcctggtccggtagatcttccgccc
cattatcttgagattgtttacatgttcacaactgacttctacgtgtgtggtgttggtccc
ctggacgaacacctggtggtcttggcatacaacaaacaaaccgatctatctctggccagc
ctaggggtggattcccgcagaccgcagatgcgtgtactggagcctctgcagggaacattt
gaagagatttctaaggatgtacttggtataagatgttatcaagagtataaaccagcaaac
taccatcttgagtgtttggtggaagataggcagttttatattgtgtgcccccaagatgtt
gttgtagccaaaccacgcagtgctgacgatcgcattgagtggttgctggagcatgacaaa
catgcagaagctttagaggtagtgaagacatcaagggaggtacagcgttacacactgctc
agtgttggtcgagtatatttagaccacttgatgtctcgtggcagtttccaggatgcggcg
aaactctgcacacagatacttggttctgacaaggcactctgggaggaggctgtggtaagg
ttcaactgtgtgcgtcaactgcgcgtgttgagtccccacctgcctctaggtcatggtgtc
aatctggatccagctgtgtatcagatggtcttgctggacctcttgcagaccgatcatcag
ggatttctgcaagtggttcaggactggccaggtcacctctacaacgtgtcatttgtcatc
aatgctgttctagagaccctggctcggaacaccaataatatgacgttgctgcaggctctt
gctcatctctactcgaacattgacaagcatgataaagccctagcaatttacctgaaacta
aaacataaggatgtcttccatctcatcgctcgccacaatctgtatgggtgtgtggctaaa
catgttgtggatctcatggtgttggactcttctgctacacttgagatctgttgcagccat
gtagacattgttccaccagacactgtcgtgtttgccctctcttcacatcaacagtttctt
tacaagtacctggacgccctgtttgaacgtcgtcgtgaactgagcaaacgataccacagt
caattggtgacgttgtatgctgacttggacaggaagaaactattgccactcctcattact
tcatcctcttatgatcttcgagctgctctccaagtgtgccaggctcgatgcctcaatgcg
gagaccattcaccttttagctcggatgggcaacacaatggaggctctgcatatcattttg
gtggaggaacaggacctggagtgggctattagattctgcaaggagcacgatgatgtcgat
ctctggagccgccttatcaactatgccttggataaaccagattgtgtgcgtgaattgctc
ctgaacattggcactcacatcgaccccttgctgatcattaatcagattccgaagggtatg
gagattcctgggcttagagatgctctggttaaaattcttcatgactatcatttgcagata
gaactgagaacaggctgccagaggattttggtgtcggacagcagcaacctgctcaccaag
cttgtgtctgcacaaaatgctgctcatcctgtatatggtgacacggagtgtgcagcatgc
aacaagagagtcctgaaccctagtcgaggagaactgcctggcttagtggtgtttgcgtgt
cgccacgtctatcaccaggattgcatacctgaagactcccaacaggatgtgtgcctagtg
tgcaggaatgacaagaagagattgttcttaacgttatga
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