Procambarus clarkii (red swamp crayfish): 123758280
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Entry
123758280 CDS
T07930
Name
(RefSeq) E3 ubiquitin-protein ligase TRIM71
KO
K12035
tripartite motif-containing protein 71 [EC:
2.3.2.27
]
Organism
pcla
Procambarus clarkii (red swamp crayfish)
Brite
KEGG Orthology (KO) [BR:
pcla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcla03019
]
123758280
04121 Ubiquitin system [BR:
pcla04121
]
123758280
Enzymes [BR:
pcla01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
123758280
Messenger RNA biogenesis [BR:
pcla03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
123758280
Ubiquitin system [BR:
pcla04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
123758280
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NHL
Filamin
DUF5128
zf-B_box
SGL
ANCHR-like_BBOX
zf-C3HC4
zf-C3HC4_2
zf-C3HC4_3
zf-RING_2
Prok-RING_4
DUF5711
zf-RING_UBOX
zf-RING_5
Beta_helix
FlgK_D1
Motif
Other DBs
NCBI-GeneID:
123758280
NCBI-ProteinID:
XP_045598418
LinkDB
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Position
11:complement(33995659..34039062)
Genome browser
AA seq
859 aa
AA seq
DB search
MASAYPGGLGSAKERLDGLGPAGLGGLGGGGLGGLGLAVSIAGGLSIGDGLHMGNNNGGV
ICPLCLGGLEEARVLPCLHAVCGPCLDSLLVGTTLACPTCHAELNLDQPLDALNPPLFLP
SILDMVSADDEITNPPPPTNMVSPSAPHVNNREQLPPLPHLHKEMAGNGRNPVYLCASCD
DGRGATSRCRDCNDALCDSCVRAHQRVRLTKDHFIVRLPNEDGNNGIGNNGNSNGGVIRS
HFSEENCHSPLILASPPPAISSHSYVVYCTIHDGEAIRLYCETCNAAICRECTLRDHRGH
SFAYLQDAAESSRTVTVKLLTDARTGIRAIEDSIGVTKRMVDRVDLRAQAVASDVRTTTR
RHITALEDRERKLLHKVERIRQVKGKTLQDQIDDLSSALARLTHTVDTLGSSVDSTNHLE
LLQTRDKVLAEMNELTLIKRHLSPHEDDNIVFTPPDNSLYQAISTMGFISSSGYAPNSLA
VGNGLKNALRGKIATFLVHGKDHLSDQRHVGGDLVTVTVHGPDGMASKADVQDRGNGSYL
VSYRPQVEGQHVIAVLMRGMHIQGSPYTVQVKTGRSYSSVGPVLLTIGGEGEGDGQLCRP
WGVCSDKDGFIIIADRSNNRVQVFSPDGTFHHCFGTAGSRPGQFDRPAGVATDNMGRIIV
ADKDNHRIQVFTFDGNFLFKFGEKGSKNGQFNYPWDVATNPEGHIVVSDTRNHRIQLFRH
DGTFLNKYGFEGALWKHFDSPRGVCFNLEGHIVVTDFNNHRLLVIHPDFQSARFLGNEGT
GTGQFLRPQGVAVDQEGHIIVADSRNHRIQIFHQNGSFMCKFGMPGSAPGQLDRPSGICV
SPDGYIIVVDFGNNRVQVF
NT seq
2580 nt
NT seq
+upstream
nt +downstream
nt
atggcgagtgcatacccaggcgggctgggcagtgccaaggagcggctggatgggctggga
ccggccgggctgggcgggctgggtggaggcgggctgggcgggctgggcttggcggtttcc
atcgctggcggcttgtccattggagatggtttgcacatgggcaacaacaacggaggagta
atatgtccattatgtcttgggggcttggaggaggcacgtgtactgccgtgccttcacgct
gtctgtggcccctgcttggactccctgctggtggggaccaccttagcctgccccacttgt
cacgctgaactcaacctcgaccaaccgcttgatgcactgaatccgccactcttcctccct
tcaattcttgacatggtgtctgctgacgatgagattacaaatcctccgcctcccaccaat
atggtcagtccctcggcaccccacgtcaacaaccgggaacagttgcctccattaccacat
cttcacaaagaaatggctggtaatggtcggaatcctgtgtatctgtgcgctagctgtgat
gatgggcggggggccacgtctcgctgtcgggactgtaatgatgccctctgtgactcctgt
gtccgggcgcatcagcgtgttcgtctcactaaagatcacttcattgtccgcttaccaaat
gaagatggcaataacggtattggtaacaatggtaacagtaacggaggtgtaattcgctct
catttttctgaagagaactgtcattcgcctctcattctggcgtctcctccaccagccatc
tcttcacattcttatgttgtttattgcaccatacatgatggcgaggcgatccggctctac
tgcgaaacttgcaatgctgctatctgcagagagtgtacgctgcgtgatcatcgtgggcac
tcgttcgcatatttgcaggatgctgccgagagctctcgaactgttacggtcaagctgctt
actgatgccaggactggaattcgtgctattgaggatagcattggtgtgacgaaacggatg
gtggatcgtgtagaccttcgcgctcaagctgtggccagtgatgttcgaacaacgacgcgc
cgccatataacagcattggaagatcgtgaacgtaagttgttacacaaagtggaaagaatt
cgtcaagttaaaggcaaaactcttcaggaccaaattgatgacctgagtagtgcccttgca
aggcttacacatactgttgacacgctgggctcgtctgtggactctaccaaccacttagag
ctccttcaaacacgagacaaagttttagcagagatgaatgaactaaccttaatcaaacgt
catcttagccctcatgaagatgataatattgtgttcactcctcctgataattctctttac
caagcaatcagtacaatgggctttatatcttcttcaggctatgccccaaattcgcttgct
gtaggaaatggattgaaaaatgcattaagaggtaaaatagccacttttctggtgcacggt
aaagatcatctttcagaccagagacatgttggtggcgacctcgtcacagtgactgttcat
ggtccagatggcatggcttcaaaggccgatgttcaagatcgtggcaatggatcatactta
gttagctaccgaccccaggttgaagggcagcatgtgattgctgtacttatgcgtggaatg
cacatacagggatccccatacaccgtacaagtcaaaacagggcgaagttactcctcagtg
ggacctgtactattaactataggtggtgaaggagaaggggatggtcagttgtgtcgtcca
tggggggtgtgctctgataaagatggttttatcatcatagctgaccgtagtaataaccgc
gtgcaggtattcagtccggatggcaccttccaccattgtttcggaacggctggatcacgg
ccagggcagtttgaccggcctgcgggtgtggctacagataatatgggcaggattattgta
gccgataaggacaaccatcgcatccaagtctttacatttgatgggaattttttattcaag
tttggtgagaagggaagtaaaaatggacaatttaattatccttgggatgttgcaactaat
ccagaaggccatattgtggtttccgatactcgaaatcacagaattcaactcttcagacat
gatggcactttcttgaataagtacggatttgagggtgcactctggaagcacttcgactcg
ccacggggcgtttgtttcaatcttgaaggtcacattgttgtcacagactttaataatcat
cgcctgcttgtgattcaccccgattttcagtctgccaggtttcttggaaatgaaggtaca
gggactgggcagtttctgagaccacagggtgttgcggttgatcaagagggacacataatt
gtggcagattctagaaatcaccgaattcaaatattccaccagaatggcagtttcatgtgc
aagtttggaatgcctggatctgcacctggccaacttgaccgtcccagtggcatctgtgtg
tctccggatggctacataattgtagtggactttggcaacaaccgggtccaggtgttctaa
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